CX675574

Overview
NameCX675574
Unique NameCX675574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5510 contig Csv1_Contig5510:1..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675574 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.790e-45
Identity = 117/327 (35.78%), Postives = 174/327 (53.21%), Query Frame = 3
Query:    6 NRLARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCGRSKE-EWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLEGEHRDEVTSFFDASGFQAKIELSVLEGKSLITCFYNYIRMHDLIRDMGREIVRNESIDHPGERSRLWYHEDIYKVLKNNTGT---------------EKIKGIFLDMNKVTREIHMNSDAFSKMPNLRFLRIYGDE------NKCMVSHLEGVPFAEVRHLEWGSCP 920
            +RL  K+ L+V DDV  P  +ES +   D     S +IIT++DK V + CR  QI+ ++ L + +A +LF  CA   D  + +  E++ K IKYA G PLAL + G  L G+ +  E E A  KL+  P     + +K SYD+L+D +KN+FLDIACF +GE+ D V    +  GF   + + VL  KSL+T   N +RMH+LI+D+GR+I+  E+      RSRLW    I  +L++                   E+I+G+FLD + ++ +I     AF  M NLR  +IY         N  +   L  +P   +R L W + P
Sbjct:  236 DRLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLIIITSKDKSVFRLCRVNQIYEVQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPLALNLYGRELMGKKRPPEMEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTISENRVRMHNLIQDVGRQIINRET-RQTKRRSRLWEPCSIKYLLEDKEQNENEEQKTTFERAQVPEEIEGMFLDTSNLSFDI--KHVAFDNMLNLRLFKIYSSNPEVHHVNNFLKGSLSSLPNV-LRLLHWENYP 558          
BLAST of CX675574 vs. ExPASy Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.975e-44
Identity = 109/313 (34.82%), Postives = 174/313 (55.59%), Query Frame = 3
Query:    9 RLARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCGRSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLEGEHRDEVTSFFDASG-FQAKIELSVLEGKSLITCFYN-YIRMHDLIRDMGREIVRNESIDHPGERSRLWYHEDIYKVLKNNTGTEKIKGIFLDMNKVTREIHMNSDAFSKMPNLRFLRIY-----GDENKCMVS-HLEGVPF-AEVRHLEWGSCP 920
            RL  +K LI+ DDV +  Q+++L +      + SR+++TT++KQ+L +     ++++      +A  +FCQ AF    P      L  +    A  +PLAL+VLG  + G+ KEEWE ++  L+   D E+++VLK+ YD L D +K++FL IAC   G+H + +     A+        L VL  KSLI  F N  I MH L+R +G+E+VR +SI  PG+R  L   ++   VL NNTGT  + GI LDM ++  E++++   F +M NL +L+ Y      D+ K  +    EG+ +  ++R L W + P
Sbjct:  285 RLKSQKVLIILDDVDNIEQLKALAKENQWFGNKSRIVVTTQNKQLLVSHDINHMYQVAYPSKQEALTIFCQHAFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLKSRLDGEVEKVLKVGYDGLHDHEKDLFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVLADKSLIQKFENGRIEMHSLLRQLGKEVVRKQSIYEPGKRQFLMNAKETCGVLSNNTGTGTVLGISLDMCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDKMKVKLQLPEEGLSYLPQLRLLHWDAYP 597          
BLAST of CX675574 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.817e-43
Identity = 107/274 (39.05%), Postives = 163/274 (59.49%), Query Frame = 3
Query:    6 NRLARKKFLIVFDDVTHP-RQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCGRSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLEGEHRDEVTSFFDASGFQAKIELSVLEGKSLI-TCFYNYIRMHDLIRDMGREIVRNESIDHPGERSRLWYHEDIYKVLKNNTGTEKIKGIFLDMNKVTREIHMNSDAFSKMPNLR 821
            +RL  KK LIV DD+ +    +E L   LD   +GSR+IITTRDK +++  +   I+ +  L D ++ +LF Q AFG + P+ +  +L+ + + YA+G+PLALKV G  L      EW+SA+  ++      I + LKISYD L+  Q+ +FLDIACFL GE +D +    ++    A+  L +L  KSL+    YN ++MHDLI+DMG+ IV  +    PGERSRLW  +++ +V+ NNTGT  ++ I++     T  +  ++ A   M  LR
Sbjct:  289 SRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHLIE--KNDIIYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQK--DPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVSSYSST--LRFSNQAVKNMKRLR 556          
BLAST of CX675574 vs. ExPASy Swiss-Prot
Match: WRK52_ARATH (Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 6.432e-42
Identity = 109/294 (37.07%), Postives = 160/294 (54.42%), Query Frame = 3
Query:    6 NRLARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMKELEDADAHKLFCQCA-FGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCGRSK-EEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLEGEHRDEVTSFFDASGFQAKIELSVLEGKSLITCFYNYIRMHDLIRDMGREIVRNESIDHPGERSRLWYHEDIYKVLKNN---------------TGTEKIKGIFLDMNKVTREIHMNSDAFSKMPNLRFLRIY 836
            +RL  K+ L+V DDV +    ES +   D L  GS +IIT+RDKQV   C   QI+ ++ L + +A +LF   A    D  + +  EL+ + I YA G PLA+ V G  L G+ K  E E+A  KL+  P  +I +  K +YD+L D +KN+FLDIACF +GE+ + V    +  GF   +E+ VL  K L+T   N + +H L +D+GREI+  E++     R RLW    I  +L+ N                G+E+I+G+FLD + +     +   AF  M NLR L+IY
Sbjct:  242 DRLNSKRVLVVLDDVRNALVGESFLEGFDWLGPGSLIIITSRDKQVFCLCGINQIYEVQGLNEKEARQLFLLSASIKEDMGEQNLQELSVRVINYANGNPLAISVYGRELKGKKKLSEMETAFLKLKRRPPFKIVDAFKSTYDTLSDNEKNIFLDIACFFQGENVNYVIQLLEGCGFFPHVEIDVLVDKCLVTISENRVWLHKLTQDIGREIINGETVQIE-RRRRLWEPWSIKYLLEYNEHKANGEPKTTFKRAQGSEEIEGLFLDTSNL--RFDLQPSAFKNMLNLRLLKIY 532          
BLAST of CX675574 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.529e-38
Identity = 105/314 (33.44%), Postives = 162/314 (51.59%), Query Frame = 3
Query:    6 NRLARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMKELEDADAHKLF----CQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCGRSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLEGEHRDEVTSFFDASGFQAKIELSVLEGKSLITCF-YNYIRMHDLIRDMGREIVRNESIDHPGERSRLWYHEDIYKVLKNNTGTEKIKGIFLDMNKVTREIHMNSDAFSKMPNLRFLRIYGD--ENKCMVSHLEGVPF--AEVRHLEWGSCP 920
            +RL RK+ L++ DDV   R +++ +  L+    GSR+I+T+R+++V   C+   ++ +K L+   +  L     CQ     +      +EL    +K++ G P  L+ L          EW    ++++      I  + + S   LDD ++ +FLDIACF     +D V    D  GF A +    L  KSL+T   +N + M   I+  GREIVR ES D PG+RSRLW  + I  V  N+TGT  I+GIFLDM  +  +   N + F KM NLR L++Y    E K  VS  +G+ +  +++R L W   P
Sbjct:  914 SRLQRKRILVILDDVNDYRDVDTFLGTLNYFGPGSRIIMTSRNRRVFVLCKIDHVYEVKPLDIPKSLLLLDRGTCQIVLSPEVYKTLSLEL----VKFSNGNPQVLQFLSS-----IDREWNKLSQEVKTTSPIYIPGIFEKSCCGLDDNERGIFLDIACFFNRIDKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHNLVDMLSFIQATGREIVRQESADRPGDRSRLWNADYIRHVFINDTGTSAIEGIFLDM--LNLKFDANPNVFEKMCNLRLLKLYCSKAEEKHGVSFPQGLEYLPSKLRLLHWEYYP 1216          
BLAST of CX675574 vs. ExPASy Swiss-Prot
Match: DRL27_ARATH (Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.493e-14
Identity = 76/293 (25.94%), Postives = 141/293 (48.12%), Query Frame = 3
Query:   12 LARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAI-KYAQGVPLALKVLGHHLCGRSKEE-WESAMRKL-EVIP-----DKEIQEVLKISYDSLDDPQKNVFLDIACFLEGEHRD--EVTSFFDASGFQAKI---ELSVLEGKSLITCFYNY-----------IRMHDLIRDMGREIVRNESIDHPGERSRLWYHEDIYKVLKNNTGTEKIKGIFLDMNKVTREIHMNSDAFSKMPNL 818
            +  +KFL++ DDV  P  ++ L         GS+VI+T+R  +V ++ +     R+  L + DA +LFC+ A  GD   + H+    KA+ +   G+PLA+  +G  + G+   + W   + KL + +P     +++I + LK+SYD L+D  K  FL  A F E    +  EV  ++ A GF  ++   E S+ EG + +    +Y           ++MHD++RD    I+ +               +D + ++ + TG + I+   L  +   R + + ++    +P+L
Sbjct:  244 MKERKFLLILDDVWKPIDLDLLGIPRTEENKGSKVILTSRFLEVCRSMKTDLDVRVDCLLEEDAWELFCKNA--GDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMRGKKNVKLWNHVLSKLSKSVPWIKSIEEKIFQPLKLSYDFLEDKAKFCFLLCALFPEDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRDFAIWIMSSS-------------QDDSHSLVMSGTGLQDIRQDKLAPS--LRRVSLMNNKLESLPDL 519          
BLAST of CX675574 vs. ExPASy Swiss-Prot
Match: DRL28_ARATH (Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 60/224 (26.79%), Postives = 112/224 (50.00%), Query Frame = 3
Query:   21 KKFLIVFDDVTHPRQIESL-IRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKY-AQGVPLALKVLGHHLCGRSK-EEWESAMRKLE-----VIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLE--GEHRDEVTSFFDASGF---QAKIELSVLEGKSLI-----TCFY------NYIRMHDLIRD 620
            K FL++ DDV HP  ++ L I      +  S+V++T+R  +V +     +  ++  L++ +A +LFC     G+  ++ +++   K + +   G+PLA+  +G  L G+ + E W+  +  L+     +  +++I   LK+SYD L D  K+ FL  A F E       E+  ++ A G    Q   E  + EG +L+     +C        + ++MHD++RD
Sbjct:  216 KNFLLILDDVWHPIDLDQLGIPLALERSKDSKVVLTSRRLEVCQQMMTNENIKVACLQEKEAWELFCHNV--GEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLRGKPQVEVWKHTLNLLKRSAPSIDTEEKIFGTLKLSYDFLQDNMKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVVRD 437          
BLAST of CX675574 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 62/223 (27.80%), Postives = 103/223 (46.19%), Query Frame = 3
Query:   27 FLIVFDDVTHPRQIE-SLIRR-LDRLASGSRVIITTRDKQVLKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHI--ELTDKAIKYAQGVPLALKVLGHHLCGRSKE-EWESAM--RKLEVIPDK-EIQEVLKISYDSLDDPQKNVFLDIACFLEGE--HRDEVTSFFDASGFQAKIE------------LSVLEGKSLITCFYNYIRMHDLIRDMGR 629
            FL+V DD+ +    +  L+R+     A GS++++TTR ++V     A  +  ++ L D D   LF +  FG   P  +    +L ++ +   +G+PLA+K LG  L    K  EWE  +  R  ++  DK  +  VL++SY  L    K  F   + F +G    +D+V   + A GF  +               S LE +SL+        MHD I ++ +
Sbjct:  279 FLLVLDDLWNENFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTKTRYIMHDFINELAQ 501          
The following BLAST results are available for this feature:
BLAST of CX675574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
WRK16_ARATH2.790e-4535.78Probable WRKY transcription factor 16 OS=Arabidops... [more]
Y4117_ARATH8.975e-4434.82Putative disease resistance protein At4g11170 OS=A... [more]
TMVRN_NICGU5.817e-4339.05TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
WRK52_ARATH6.432e-4237.07Probable WRKY transcription factor 52 OS=Arabidops... [more]
WRK19_ARATH2.529e-3833.44Probable WRKY transcription factor 19 OS=Arabidops... [more]
DRL27_ARATH1.493e-1425.94Disease resistance protein At4g27190 OS=Arabidopsi... [more]
DRL28_ARATH4.496e-1126.79Probable disease resistance protein At4g27220 OS=A... [more]
R13L1_ARATH7.668e-1127.80Putative disease resistance RPP13-like protein 1 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63B11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63B11-C21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675574 ID=CX675574; Name=CX675574; organism=Citrus sinensis; type=EST; length=922bp
AACTCAACAGACTTGCTCGCAAGAAGTTTCTAATTGTTTTTGATGATGTG
ACTCATCCAAGACAAATAGAATCATTAATTAGACGCCTTGATCGGTTAGC
TTCAGGGAGTCGAGTGATAATAACAACAAGGGATAAACAAGTACTTAAAA
ATTGTCGGGCCAGGCAAATATTTCGGATGAAGGAATTAGAAGATGCTGAT
GCTCATAAGCTTTTCTGTCAGTGTGCTTTTGGAGGAGACCATCCAGATGC
AAGTCATATAGAGCTCACAGACAAGGCAATCAAATATGCGCAGGGGGTTC
CTTTAGCTCTTAAAGTTTTGGGTCACCATCTATGCGGAAGGAGCAAAGAG
GAATGGGAAAGTGCAATGAGAAAACTGGAAGTAATTCCTGACAAGGAAAT
CCAGGAGGTATTAAAAATAAGTTATGATAGCTTGGATGACCCTCAGAAGA
ATGTTTTTCTAGATATTGCATGTTTCTTAGAAGGAGAGCATAGAGATGAG
GTGACAAGCTTTTTTGATGCTAGTGGCTTCCAAGCTAAAATAGAATTAAG
TGTTCTTGAAGGTAAGTCTCTCATAACTTGCTTCTATAACTACATAAGGA
TGCATGATTTGATACGAGATATGGGAAGAGAAATTGTTCGAAATGAATCT
ATCGATCATCCAGGAGAGCGCAGTAGGTTGTGGTATCACGAGGATATTTA
TAAAGTTCTGAAGAACAATACGGGAACTGAAAAAATCAAGGGTATCTTCT
TGGATATGAATAAAGTCACTAGAGAGATACACATGAATTCCGATGCTTTC
TCAAAGATGCCTAACTTGAGATTCTTGAGAATCTATGGAGATGAGAACAA
ATGTATGGTCTCTCATTTGGAGGGTGTGCCATTTGCTGAAGTGAGGCACC
TCGAGTGGGGCTCATGTCCTTT
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