CK938898

Overview
NameCK938898
Unique NameCK938898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938898_ssr49 microsatellite CK938898_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK938898 vs. ExPASy Swiss-Prot
Match: SFC1_YEAST (Succinate/fumarate mitochondrial transporter OS=Saccharomyces cerevisiae GN=SFC1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.321e-31
Identity = 84/241 (34.85%), Postives = 121/241 (50.21%), Query Frame = 3
Query:  138 KKTIPPYMKAVSDSLGGVVEACCLQPIDVIKTRLQL--DTTGTYK----GIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPEL----LKYKGPIHCARMVIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRL 830
            KK   P +  ++    G+ EA C  P+D IK R+Q+     G       G I  G T+ + EG  AL+KGL      +  K  +R  S   +++   + ++G +S     +AG GAG+ EA+ +V P EVVKIRLQ Q  L+P       KY   IH A  +++EEG+  L+ G + T  R  TNQ A FT  +     L   H+ D  VL  W++   G ++G  GP    P D +KTRL
Sbjct:    5 KKASHPAINLMAGGTAGLFEALCCHPLDTIKVRMQIYRRVAGIEHVKPPGFIKTGRTIYQKEGFLALYKGLGAVVIGIIPKMAIRFSSYEFYRTLLVNKESGIVSTGNTFVAGVGAGITEAVLVVNPMEVVKIRLQAQH-LTPSEPNAGPKYNNAIHAAYTIVKEEGVSALYRGVSLTAARQATNQGANFTVYSKLKEFLQNYHQMD--VLPSWETSCIGLISGAIGPFSNAPLDTIKTRL 242          
BLAST of CK938898 vs. ExPASy Swiss-Prot
Match: TXTP_RAT (Tricarboxylate transport protein, mitochondrial OS=Rattus norvegicus GN=Slc25a1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.851e-26
Identity = 75/240 (31.25%), Postives = 120/240 (50.00%), Query Frame = 3
Query:  123 PSPVPKKTIPPYMKAVSDSLGGVVEACCLQPIDVIKTRLQLDTTGT---YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIR-LQQQRGLSPELLKYKGPIHCARMVIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRL 830
            P     K   P    ++  L G +E C   P + +KT+LQLD       Y+GI  C     R+ GV  L++GL+        K  +R G      +  +D++ G++ ++  L+ G GAGV EA+ +V P E VK++ +  Q   +P   KY+G  H  R ++RE+GL G + G   TV++ G+NQA  F    +  +  W + +   K + P  + + G +AG A      P DV+KTR+
Sbjct:   15 PGSGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERANPPRYRGIGDCVRQTVRSHGVLGLYRGLSSLLYGSIPKAAVRFGMFEFLSNHMRDAQ-GRLDSRRGLLCGLGAGVAEAVVVVCPMETVKVKFIHDQTSSNP---KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTS--LRNWYQGDNPNKPMNPLITGVFGAVAGAASVFGNTPLDVIKTRM 248          
BLAST of CK938898 vs. ExPASy Swiss-Prot
Match: TXTP_HUMAN (Tricarboxylate transport protein, mitochondrial OS=Homo sapiens GN=SLC25A1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.724e-26
Identity = 78/258 (30.23%), Postives = 126/258 (48.84%), Query Frame = 3
Query:  123 PSPVPKKTIPPYMKAVSDSLGGVVEACCLQPIDVIKTRLQLDTTG---TYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIR-LQQQRGLSPELLKYKGPIHCARMVIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMGPC 884
            P+    K   P    ++  L G +E C   P + +KT+LQLD       Y+GI  C     R+ GV  L++GL+        K  +R G      +  +D++ G++ +   L+ G GAGV EA+ +V P E +K++ +  Q   +P   KY+G  H  R ++RE+GL G + G   TV++ G+NQA  F    +  +  W + +   K + P  + + G +AG A      P DV+KTR+    +G    KY+    C
Sbjct:   15 PASGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVLGLYRGLSSLLYGSIPKAAVRFGMFEFLSNHMRDAQ-GRLDSTRGLLCGLGAGVAEAVVVVCPMETIKVKFIHDQTSPNP---KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTS--LRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRM----QGLEAHKYRNTWDC 262          
BLAST of CK938898 vs. ExPASy Swiss-Prot
Match: TXTP_BOVIN (Tricarboxylate transport protein, mitochondrial OS=Bos taurus GN=SLC25A1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.296e-26
Identity = 73/241 (30.29%), Postives = 120/241 (49.79%), Query Frame = 3
Query:  120 NPSPVPKKTIPPYMKAVSDSLGGVVEACCLQPIDVIKTRLQLDTTG---TYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIR-LQQQRGLSPELLKYKGPIHCARMVIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRL 830
            +P     K   P    ++  L G +E C   P + +KT+LQLD       Y+GI  C     R+ G+  L++GL+        K  +R G+     +  +D++ G++ +   L+ G GAGV EA+ +V P E +K++ +  Q   SP   KY+G  H  R ++RE+GL G + G   TV++ G+NQ   F    +  +  W + +   K + P  + + G +AG A      P DV+KTR+
Sbjct:   14 SPGSGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGLLGLYRGLSSLLYGSIPKAAVRFGTFEFLSNHMRDAQ-GRLDSTRGLLCGLGAGVPEAVVVVCPMETIKVKFIHDQTSASP---KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQGIRFFVMTS--LRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRM 248          
BLAST of CK938898 vs. ExPASy Swiss-Prot
Match: ODC2_YEAST (Mitochondrial 2-oxodicarboxylate carrier 2 OS=Saccharomyces cerevisiae GN=ODC2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.033e-23
Identity = 71/248 (28.63%), Postives = 120/248 (48.39%), Query Frame = 3
Query:  141 KTIPPYMKAVSDSLGGVVEACCLQPIDVIKTRLQLDTTGT-----------YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDS-KTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMVIREEGLFGLWAGAAPTVMR----NGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMA 836
            K +P   + +S ++ G+ E   + P+DV+KTR QL+ T             Y G+I C   + + EG   L++G++        K   +   N  +Q  FK+   T + + +  + AG  AG+ EA A++ PFE++KIR+Q  +        Y GP+ C +  I+ EG+ GL+ G   T+ R    NG     ++  +N+  V   K         +    +I+G + GT G +   PFDVVK+R+ +
Sbjct:    8 KPLPFIYQFISGAVAGISELTVMYPLDVVKTRFQLEVTTPTAAAVGKQVERYNGVIDCLKKIVKKEGFSRLYRGISSPMLMEAPKRATKFACNDQYQKIFKNLFNTNETTQKISIAAGASAGMTEA-AVIVPFELIKIRMQDVKS------SYLGPMDCLKKTIKNEGIMGLYKGIESTMWRNALWNGGYFGVIYQVRNSMPVAKTKGQ-------KTRNDLIAGAIGGTVGTMLNTPFDVVKSRIQS 241          
BLAST of CK938898 vs. ExPASy Swiss-Prot
Match: TXTP_CAEEL (Putative tricarboxylate transport protein, mitochondrial OS=Caenorhabditis elegans GN=K11H3.3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.262e-22
Identity = 80/245 (32.65%), Postives = 115/245 (46.94%), Query Frame = 3
Query:  168 VSDSLGGVVEACCLQPIDVIKTRLQLD---TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMVIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFL---AGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMGPC 884
            V   + G +E C   P + +KT+LQLD    T  ++G I C        G   L++GL+        K + R G+    +S   D + G +S   RL+ G GAG+ EA+  VTP E VK++    +GL+    KYKG +H    +++ EGL G++ G   T+ + G+NQA  F     F +   K     G   QP    I G +   AG A      P DVVKTR+    +G    KYK    C
Sbjct:   30 VIGGITGGIEICITFPTEYVKTQLQLDERSATPKFRGPIDCVKQTVNGHGFFGLYRGLSVLLYGSIPKSSFRFGTFEYLKSQAADER-GNLSPVMRLLCGLGAGLSEAVFAVTPMETVKVKFIHDQGLAQP--KYKGFVHGVGCIVKAEGLGGIYKGVTATMAKQGSNQAIRF-----FVMETLKDWYRGGDNTQPISKPIVGLMGAVAGAASVYGNTPIDVVKTRM----QGLEAKKYKNTLDC 262          
BLAST of CK938898 vs. ExPASy Swiss-Prot
Match: TXTP_YEAST (Tricarboxylate transport protein OS=Saccharomyces cerevisiae GN=CTP1 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 4.711e-21
Identity = 71/245 (28.98%), Postives = 114/245 (46.53%), Query Frame = 3
Query:  126 SPVPKKTIPPYMKAVSDSLGGVVEACCLQPIDVIKTRLQL--DTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRL-QQQRGLSPELLKY----KGPIHCARMVIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEG-DGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMA 836
            S   K  + P    ++ SL G  EAC   P +  KTRLQL    +   +  +      ++T+G+ +++ G   F    T K  +R       +   +DS+TG++S    ++AG GAG+LE++A VTPFE +K  L   ++  +P   KY    +G +     ++R++G  GL+ G  P  MR   NQA      N    L+    +    K L    + + G  +G      T P D VKTR+ +
Sbjct:    3 SKATKSDVDPLHSFLAGSLAGAAEACITYPFEFAKTRLQLIDKASKASRNPLVLIYKTAKTQGIGSIYVGCPAFIIGNTAKAGIRFLGFDTIKDMLRDSETGELSGTRGVIAGLGAGLLESVAAVTPFEAIKTALIDDKQSATP---KYHNNGRGVVRNYSSLVRDKGFSGLYRGVLPVSMRQAANQAVRLGCYNKIKTLIQDYTDSPKDKPLSSGLTFLVGAFSGIVTVYSTMPLDTVKTRMQS 244          
BLAST of CK938898 vs. ExPASy Swiss-Prot
Match: S2545_MOUSE (Solute carrier family 25 member 45 OS=Mus musculus GN=Slc25a45 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.049e-20
Identity = 74/253 (29.25%), Postives = 123/253 (48.62%), Query Frame = 3
Query:  153 PYMKAVSDSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMG--SN---AVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRG----LSPELLKYKGPIHCARMVIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMGPC 884
            P  + V+  + G V      P D +K RLQ  T  TY+GI+ C     R E V   +KG++     + L  ++  G  SN   A+  ++ ++ +    S     +AG   G+L+A  +  PF+++K+RLQ Q      +S  + +Y+GP+HCA  ++REEG  GL+ G+   V+R+       F         L +++  +G+       +++G  AG A  +   PFDV+K+R+      G   KY GM  C
Sbjct:    2 PVEEFVAGWISGAVGLVLGHPFDTVKVRLQ--TQSTYQGIVDCVVKTYRHESVLGFFKGMSFPIASVALVNSVLFGVYSNTLLALTATSHQERRAQPPSYTNIFIAGCTGGLLQAYCLA-PFDLIKVRLQNQTEPRMQISSSMPRYRGPVHCAASILREEGPQGLFRGSWALVLRDTPTLGMYFVTYEG----LCRQYTPEGQNPSSATVLVAGGFAGIASWITATPFDVIKSRMQMDGLKG--RKYGGMLDC 245          
BLAST of CK938898 vs. ExPASy Swiss-Prot
Match: AGC1_YEAST (Mitochondrial aspartate-glutamate transporter AGC1 OS=Saccharomyces cerevisiae GN=AGC1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.371e-20
Identity = 75/239 (31.38%), Postives = 117/239 (48.95%), Query Frame = 3
Query:  177 SLGGVVEACCLQPIDVIKTRLQLDTT-GTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMVIREEGLFGLWAGAAPTVMRNGTNQAAMFTA-----KNAFDVLLWKKHEGDGKVLQPWQSMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGM 875
            S+ G + A  + PID IKTR+Q   +   YK  I C   +   EG++ L+ GL P    +  +  +++  N   ++   D K GK+S    +++G  AG  + +    P E+VKIRLQ Q     E ++       A  ++++ GL GL+ G A  +MR+    A  F       K+ FD     K + +   L+ W+ + +G +AG      T PFDV+KTRL    R  GE KY G+
Sbjct:  538 SIAGCIGATVVYPIDFIKTRMQAQRSLAQYKNSIDCLLKIISREGIKGLYSGLGPQLIGVAPEKAIKLTVNDFMRNRLTD-KNGKLSLFPEIISGASAGACQVI-FTNPLEIVKIRLQVQSDYVGENIQQAN--ETATQIVKKLGLRGLYNGVAACLMRDVPFSAIYFPTYAHLKKDLFDFDPNDKTKRNR--LKTWELLTAGAIAGMPAAFLTTPFDVIKTRLQIDPR-KGETKYNGI 769          
BLAST of CK938898 vs. ExPASy Swiss-Prot
Match: HDCPA_DANRE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog A OS=Danio rerio GN=hdmcpa PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.338e-20
Identity = 72/247 (29.15%), Postives = 120/247 (48.58%), Query Frame = 3
Query:  168 VSDSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQ----RGLSPELL---KYKGPIHCARMVIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKNAFDVLLWKKHEGDGKVLQPWQ-SMISGFLAGTAGPVCTGPFDVVKTRLMAQSRGGGELKYKGMGPC 884
            ++ S GG        P+D +K R+Q  T   + GI  C     R EGV   +KG+    T +++  ++  G+      A    +  + +     M+G   GV + +++++P ++VK+RLQ Q      ++P+     KY GPIHC   + RE+GL GL+ GA P  +R+G + A  F   +     L  +   DG+    W   ++SG +AG +G     P DV+K RL       G+ +Y+G+  C
Sbjct:    7 LAGSFGGACGVAVGYPLDTVKVRIQ--TQKQFTGIWQCIVLTIRKEGVHGFFKGMFLPITTISMTSSVVFGTYRNCLQALSYIRKAENTKLDVFMSGLAGGVAQ-VSVMSPGDIVKVRLQCQTESRHSVNPKYSVKPKYSGPIHCLLSICREQGLSGLYRGALPLALRDGPSFATYFLTYHT----LCARLTPDGQKEPEWTVVLLSGGVAGMSGWAVGTPMDVIKARLQMDG-VRGQRRYRGLLHC 245          
The following BLAST results are available for this feature:
BLAST of CK938898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
SFC1_YEAST1.321e-3134.85Succinate/fumarate mitochondrial transporter OS=Sa... [more]
TXTP_RAT2.851e-2631.25Tricarboxylate transport protein, mitochondrial OS... [more]
TXTP_HUMAN3.724e-2630.23Tricarboxylate transport protein, mitochondrial OS... [more]
TXTP_BOVIN8.296e-2630.29Tricarboxylate transport protein, mitochondrial OS... [more]
ODC2_YEAST5.033e-2328.63Mitochondrial 2-oxodicarboxylate carrier 2 OS=Sacc... [more]
TXTP_CAEEL3.262e-2232.65Putative tricarboxylate transport protein, mitocho... [more]
TXTP_YEAST4.711e-2128.98Tricarboxylate transport protein OS=Saccharomyces ... [more]
S2545_MOUSE1.049e-2029.25Solute carrier family 25 member 45 OS=Mus musculus... [more]
AGC1_YEAST1.371e-2031.38Mitochondrial aspartate-glutamate transporter AGC1... [more]
HDCPA_DANRE2.338e-2029.15Hepatocellular carcinoma down-regulated mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_H03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938898 ID=CK938898; Name=CK938898; organism=Citrus sinensis; type=EST; length=907bp
GGGGAGGAGGGAAGCAAGAAGAAGAGAAGCAATTCCCAGAAGCACTTCTC
TTCTTCTTCTCCAACTTCCCACTGTAAGCTTTTGGACACTTGTTTTCTAT
GGATAATAAGCGAGAGCAAAACCCGAGCCCGGTTCCGAAGAAGACGATCC
CACCGTACATGAAAGCGGTGTCGGATTCTCTCGGAGGGGTCGTGGAGGCT
TGTTGCTTGCAGCCAATCGACGTCATCAAGACGAGGTTACAGCTGGACAC
AACTGGGACTTACAAGGGAATTATCCACTGCGGCGCCACCGTTTCGCGTA
CCGAAGGCGTGCGGGCTCTGTGGAAAGGATTGACGCCGTTTGCCACCCAC
TTGACCTTAAAGTACACGCTTCGAATGGGATCGAATGCCGTGTTTCAATC
GGCGTTTAAGGATTCTAAAACGGGGAAGATTAGCAATCAGGGTCGGCTAA
TGGCTGGCTTTGGTGCTGGTGTGCTTGAAGCTCTCGCTATTGTTACTCCT
TTTGAGGTGGTGAAAATTAGACTACAACAGCAGAGAGGTTTGAGTCCTGA
GCTTCTAAAGTACAAGGGTCCTATACACTGTGCTCGTATGGTCATCCGTG
AGGAAGGACTCTTTGGACTCTGGGCAGGGGCTGCCCCAACTGTTATGCGC
AATGGGACAAACCAAGCTGCCATGTTTACGGCTAAAAATGCTTTTGATGT
ACTCTTGTGGAAGAAACATGAAGGTGATGGGAAGGTCCTCCAACCGTGGC
AGTCCATGATATCGGGATTCCTTGCAGGAACAGCAGGTCCAGTATGCACT
GGCCCTTTTGATGTTGTCAAGACGAGGCTGATGGCCCAGAGTCGAGGTGG
GGGTGAGTTAAAGTACAAAGGCATGGGTCCATGCAATCAGNNCNNTATAT
GCTGAGG
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