CX675572

Overview
NameCX675572
Unique NameCX675572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675572 vs. ExPASy Swiss-Prot
Match: DAPB2_ARATH (Dihydrodipicolinate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=DAPB2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.603e-32
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = -3
Query:   87 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLREGNMQ 239
            VSF+FQHNVCGRSIYAEGTVDA+LFL+KK++SKA+K I NMIDVLREGNM+
Sbjct:  299 VSFEFQHNVCGRSIYAEGTVDAVLFLAKKIRSKAEKRIYNMIDVLREGNMR 349          

HSP 2 Score: 71.633 bits (174), Expect = 1.603e-32
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = -2
Query:  241 PGGFSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDMDQ 372
            PG F+GY L+V+ESHQA KLD SGTAKAVIS FQKL VS+DMDQ
Sbjct:  218 PGAFAGYSLEVMESHQASKLDASGTAKAVISCFQKLGVSYDMDQ 261          
BLAST of CX675572 vs. ExPASy Swiss-Prot
Match: DAPB1_ARATH (Dihydrodipicolinate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=DAPB1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.727e-31
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = -3
Query:   87 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLREGNMQ 239
            VSF+FQHNVCGRSIYAEGTVDA+LFL+KK++ KAD+ I NMIDVLREGNM+
Sbjct:  297 VSFEFQHNVCGRSIYAEGTVDAVLFLAKKIRLKADQRIYNMIDVLREGNMR 347          

HSP 2 Score: 70.4774 bits (171), Expect = 1.727e-31
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = -2
Query:  241 PGGFSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDMDQ 372
            PG FSGY L V+ESHQA KLD SGTAKAVIS FQ+L VS+DMDQ
Sbjct:  216 PGAFSGYSLDVMESHQASKLDASGTAKAVISCFQELGVSYDMDQ 259          
BLAST of CX675572 vs. ExPASy Swiss-Prot
Match: DAPB1_ORYSJ (Probable dihydrodipicolinate reductase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.390e-29
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = -3
Query:   87 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLREGNMQ 239
            VSF+FQHNVCGRSIYAEGTVDA LFL KK+QS A+K + +MIDVLREGNM+
Sbjct:  293 VSFEFQHNVCGRSIYAEGTVDAALFLHKKIQSGANKKLYDMIDVLREGNMR 343          

HSP 2 Score: 66.2402 bits (160), Expect = 3.390e-29
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = -2
Query:  241 PGGFSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDMDQ 372
            PG FSGY L+V+ESHQA KLD SGTAKAVIS FQKL VSF++++
Sbjct:  212 PGAFSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNE 255          
BLAST of CX675572 vs. ExPASy Swiss-Prot
Match: DAPB2_ORYSJ (Probable dihydrodipicolinate reductase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.748e-28
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = -3
Query:   87 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLREGNMQ 239
            VSF+FQHNVCGRSIYAEG+VDA +FL +KV+S   K I +MIDVLREG+M+
Sbjct:  275 VSFEFQHNVCGRSIYAEGSVDAAMFLHRKVRSNDSKRIYDMIDVLREGSMR 325          

HSP 2 Score: 70.0922 bits (170), Expect = 4.748e-28
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = -2
Query:  241 PGGFSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDMDQ 372
            PG FSGY L+VLESHQAGKLD SGTAKAVI+ F+KL VS+DM++
Sbjct:  194 PGAFSGYHLEVLESHQAGKLDISGTAKAVIACFEKLGVSYDMNR 237          
The following BLAST results are available for this feature:
BLAST of CX675572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DAPB2_ARATH1.603e-3282.35Dihydrodipicolinate reductase 2, chloroplastic OS=... [more]
DAPB1_ARATH1.727e-3180.39Dihydrodipicolinate reductase 1, chloroplastic OS=... [more]
DAPB1_ORYSJ3.390e-2978.43Probable dihydrodipicolinate reductase 1, chloropl... [more]
DAPB2_ORYSJ4.748e-2870.59Probable dihydrodipicolinate reductase 2, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63B10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63B10-C19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675572 ID=CX675572; Name=CX675572; organism=Citrus sinensis; type=EST; length=940bp
TTTCTGACAAATTTGGTTTTTAACCGAAATAGAAGCTAAAATATATCCAT
CATTAACTATTCCAAAAACTCTTTTTTGTTCATATCTTGCATGTTTCCCT
CTCTCAAGACATCTATCATGTTAGAGATACACTTGTCTGCCTTCGACTGA
ACCTTCTTAGAAAGGAAAAGCAGAGCATCAACAGTCCCCTCTGCATAAAT
TGATCTACCGCAAACATTATGCTGAAATTGAAAAGAAACTCTGATCCATA
TCAAAAGACACCCTTAATTTCTGAAAGCTTGAGATAACAGCTTTGGCAGT
TCCAGATGTGTCCAATTTACCAGCTTGATGGGACTCCAACACCTGCAAAA
AATACCCAGAGAAGCCTCCAGGAATAACCAAAGCATTTTTCATTCATACC
CAGAGGTTTCACTTGCTGCCAAGCCTTCAATCTAAAACCCACAGGTTTGT
TGGACGTTGCAACACTCCAAAATCCAGTGAGAACTTAGCCTCCTCTAAAG
AGCCAAGAGCCGGTTTGCATTAATGACAATTTCGACAAGGGAAATCACAC
CATCAATCTGAACTTCGAGACCGTTCAGATCAGTCATCCATTTCATCAAC
TTTCTCCCAGCACAAGATTTTCCCAGCTTTAGTGAATATAACCTCTGGGA
AGACAGATACTTGAAGAGCAGAAACTAAGTCATGCTCAATGTTAGCATCA
ATTACTCGTGGCGAAGGCAGCCTACAATTCCATATGATGTGCACTGCTTT
TTCCAGTTCGTCCCTAATTCTTTCATTTTCCTTTGGCCTTTTATAGCGAT
TATGTACGAGAACAATTAAAGGACTGATGTCTTTGAAAACAGCCTCTTCC
CGTTCTGCAGTCTCGATGTCTTTGATAGGACGTATGTAATTATCATCTTG
CCACACTATTTCATTCTCACTATCGTAATTCTCATCATCT
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