CX675564

Overview
NameCX675564
Unique NameCX675564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675564_ssr55 microsatellite CX675564_ssr55:55..74. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9109 contig Csv1_Contig9109:233..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675564 vs. ExPASy Swiss-Prot
Match: RETOL_ARATH (Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.929e-43
Identity = 88/213 (41.31%), Postives = 138/213 (64.79%), Query Frame = -2
Query:  214 DRLLQVMQESFPELGLTQKDCIETSWIKSALYIAGYPSNTP--PEVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAK-HMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSI 843
            D ++ ++ + FPELGL +++C E +W +SAL+     + T   P+V L       ++ K KSD+V   IP+  +E L+K+ +E      ++NPYGG M+++A +A PFPHRN  LFKIQY  NW++    + K ++   + LY++M  +VS  PR++Y NYRD+D+G+N+    S+ +   +G +YF +NF RLV++KT VDP NFFR+EQSI
Sbjct:  322 DEVVALLSKEFPELGLKKENCSEMTWFQSALWWDNRLNATQVDPKVFLDRNLDTSSFGKRKSDYVATAIPKKGIESLFKKMIELGKIGLVFNPYGGKMAEVAVNAKPFPHRN-KLFKIQYSVNWKENSAEIEKGYLNQAKVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDHGANSYKEGEVYGRKYFGENFDRLVKIKTAVDPGNFFRNEQSI 533          
BLAST of CX675564 vs. ExPASy Swiss-Prot
Match: RETO_ESCCA (Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.805e-38
Identity = 84/210 (40.00%), Postives = 119/210 (56.67%), Query Frame = -2
Query:  214 FPELGLTQKDCIETSWIKSALYIAGYPSNTPPEVLLQGKSTFKNY----FKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNW-QDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLG---MNNKS--NTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSI 813
            FPELGL ++D +E SW +S  Y+AG       E + Q  + F  +    FK K D  +EP+P  A  GL +R  +E       N +GG MSKI+    PFPHR+GT   ++Y+  W Q   K   + ++W+ ++Y +M P+VS  PR  YVN+ DLDLG     NK+  N +   + +WG  YF  N+ RL+R KT +DP+N F H QSI
Sbjct:  313 FPELGLVEEDYLEMSWGESFAYLAGL------ETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSI 516          
BLAST of CX675564 vs. ExPASy Swiss-Prot
Match: RETO_PAPSO (Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.768e-35
Identity = 80/216 (37.04%), Postives = 117/216 (54.17%), Query Frame = -2
Query:  214 DRLLQVMQESFPELGLTQKDCIETSWIKSALYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNW-QDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLG----MNNKSNTSFIQ-ATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSI 843
            D    ++ E FPELGL  K+  E SW +S  +++G   +T  E+  +     +  FK K DF +  +P        +   E+ G     N +GG MS+I+    PFPHR GT    +Y+  W QD +  + +  EW+ + Y+Y+ P+VS  PR  YVN+ DLD+G     N  S T+ ++ A  WG RYF  N+ RLV+ KT +DP+N F H QSI
Sbjct:  307 DAAKTIIDEKFPELGLVDKEFQEMSWGESMAFLSGL--DTISELNNRFLKFDERAFKTKVDFTKVSVPLNVFRHALEMLSEQPGGFIALNGFGGKMSEISTDFTPFPHRKGTKLMFEYIIAWNQDEESKIGEFSEWLAKFYDYLEPFVSKEPRVGYVNHIDLDIGGIDWRNKSSTTNAVEIARNWGERYFSSNYERLVKAKTLIDPNNVFNHPQSI 520          
The following BLAST results are available for this feature:
BLAST of CX675564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RETOL_ARATH3.929e-4341.31Reticuline oxidase-like protein OS=Arabidopsis tha... [more]
RETO_ESCCA3.805e-3840.00Reticuline oxidase OS=Eschscholzia californica GN=... [more]
RETO_PAPSO1.768e-3537.04Reticuline oxidase OS=Papaver somniferum GN=BBE1 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63B04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63B04-C7-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675564 ID=CX675564; Name=CX675564; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTTTTTGAAAGAAACATTAAATGTCATTTCTACAACATTTAAAGC
CACGATATATATATATATATATATAATATACTTAACATTTTTCTATTATG
TTTAAAAAGCCAAACATTATATCTAATACAAATAAGCTACTATTATTCCA
ATCAAGCCATACATCGCTCCAACTCTTCAATAATCTCTAGCCTTGCTGCA
GTGGAAGAGGTGGAATGCTCTGTTCATGCCTGAAAAAGTTATCGGGATCG
ACTTTGGTCTTCACTCTTACCAACCTCATGAAATTATCCTTAAAATACCT
GGACCCCCAAGCAGTGGCCTGAATGAAACTCGTGTTACTCTTGTTGTTCA
TGCCCAAATCAAGATCCCTGTAATTCACATATGCAGCCCTGGGTAACATT
GAAACATAAGGAGCCATGTAATTGTACAACCTCCTGATCCATTCCATATG
CTTCGCCATGTTCTTGTCTCCGTCTTGCCAGTTAGTTACGTACTGGATTT
TGAATAAAGTACCATTTCTGTGAGGAAAAGGAATTGCAGATTCTGCAATC
TTGCTCATCATTCCACCATAAGGATTCCATATTGACAACGGACCTTCTTC
TTCCAGAAATCTTTTCCACAGCCCTTCAAGTGCAGTTTCAGGAATTGGTT
CTCTAACAAAGTCTGATTTGGCTTTGAAATAGTTCTTGAAAGTAGATTTT
CCCTGCAGAAGAACTTCAGGTGGTGTGTTGCTTGGATAGCCGGCAATATA
CAGCGCAGATTTGATCCAGCTTGTTTCGATACAATCCTTTTGGGTCAATC
CCAATTCCGGGAAGCTCTCTTGCATTACTTGGAGAAGTCTATCAACT
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