CK938855

Overview
NameCK938855
Unique NameCK938855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig304 contig Csv1_Contig304:468..1412. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938855 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 8.138e-64
Identity = 126/173 (72.83%), Postives = 138/173 (79.77%), Query Frame = 3
Query:   42 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTLPVGGPPDMPPYCYMPTQHASQVGSAGMIMGKPVMDPAIYAQQSHPYMGQQMWPQGADQQ 560
            +FW NQ++EIEK  DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIVPREDL+DEVL SIPRGT+P        PY Y+P   A  +G+ GM+MG P       A   +PYMGQ MW Q A  Q
Sbjct:   61 AFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAAGY-PYGYLPAGTA-PIGNPGMVMGNPG-----GAYPPNPYMGQPMWQQQAPDQ 226          
BLAST of CK938855 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.200e-60
Identity = 120/178 (67.42%), Postives = 134/178 (75.28%), Query Frame = 3
Query:   42 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTLPVGGPPDMPPYCYMPTQHASQVGSAGMIMGKPVMDPAIYAQQSHPYMGQQMWPQGADQQRSPSD 575
            SFW  Q++EIEK  DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIVPREDL+DEVL  +        G     PY Y+P   A  +G+ GM+MG P   P       +PYMGQ MW Q   +Q+ P +
Sbjct:   51 SFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAG----YPYGYLPPGTA-PIGNPGMVMGNPGAYP------PNPYMGQPMWQQPGPEQQDPDN 217          
BLAST of CK938855 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 7.146e-52
Identity = 105/155 (67.74%), Postives = 121/155 (78.06%), Query Frame = 3
Query:   45 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTLPVGGPPDMPPYCYMPTQHASQVGSAGMIMGKPVMDP-AIYAQ 506
            FW  Q QEIE+VNDFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++KDE  A++  G + V       PY Y P       G  GM++G+P MDP  +Y Q
Sbjct:   47 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE--AAVLGGGMVVAPTASGVPYYYPPM--GQPAGPGGMMIGRPAMDPNGVYVQ 197          
BLAST of CK938855 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.632e-51
Identity = 108/170 (63.53%), Postives = 123/170 (72.35%), Query Frame = 3
Query:   45 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEV-LASIPRGTLPVGGPPDMPPYCYMPTQHASQVGSAGMIMGKPVMDPAIYAQQSHPYMGQQMWPQGA 551
            FW  Q QEIE+VNDFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE++K+E   AS   G   V       PY Y P    +  G  GM++G+P MDP+    Q      Q +W   A
Sbjct:   60 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQPAVPG--GMMIGRPAMDPSGVYAQPPSQAWQSVWQNSA 227          
BLAST of CK938855 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.946e-49
Identity = 101/136 (74.26%), Postives = 114/136 (83.82%), Query Frame = 3
Query:   45 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTLP--VGGPPDMPPYCYMPTQHASQ 446
            FWANQ QEIE   DFKNH+LPLARIKKIMKADEDVRMISAEAPVIFA+ACEMFILELTLR+W HTEENKRRTLQKNDIAAAI+RTD+FDFLVDI+PR++LK+E L  + +GT+P  VG     PPY Y+  Q   Q
Sbjct:   58 FWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGL-GVTKGTIPSVVGS----PPYYYLQQQGMMQ 188          
BLAST of CK938855 vs. ExPASy Swiss-Prot
Match: NFYC6_ARATH (Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.720e-34
Identity = 81/172 (47.09%), Postives = 108/172 (62.79%), Query Frame = 3
Query:   42 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTLPVGGPP--DMPPYCYMPTQHASQVGSAGMIMGKPVMDPAIYAQQSHPYMGQQMWPQGA 551
            ++W  Q   +E V+DFKN  LPLARIKKIMKAD DV M+SAEAP+IFA+ACEMFI++LT+RSW   EENKR TLQK+DI+ A+  +  +DFL+D+VP    KDE +A+   G + +  P    +P Y Y P          G++MG P++   +YA         Q WP  A
Sbjct:   38 NYWIEQ---METVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVP----KDESIATADPGFVAMPHPDGGGVPQYYYPP----------GVVMGTPMVGSGMYAP-------SQAWPAAA 185          
BLAST of CK938855 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.553e-33
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 3
Query:   42 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 347
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of CK938855 vs. ExPASy Swiss-Prot
Match: NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.553e-33
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 3
Query:   42 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 347
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of CK938855 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.553e-33
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 3
Query:   42 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 347
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of CK938855 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 2.553e-33
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 3
Query:   42 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 347
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
The following BLAST results are available for this feature:
BLAST of CK938855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC9_ARATH8.138e-6472.83Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC3_ARATH3.200e-6067.42Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC1_ARATH7.146e-5267.74Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC4_ARATH4.632e-5163.53Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC2_ARATH1.946e-4974.26Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC6_ARATH6.720e-3447.09Nuclear transcription factor Y subunit C-6 OS=Arab... [more]
NFYC_RAT2.553e-3368.27Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_PONAB2.553e-3368.27Nuclear transcription factor Y subunit gamma OS=Po... [more]
NFYC_MOUSE2.553e-3368.27Nuclear transcription factor Y subunit gamma OS=Mu... [more]
NFYC_HUMAN2.553e-3368.27Nuclear transcription factor Y subunit gamma OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_C12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938855 ID=CK938855; Name=CK938855; organism=Citrus sinensis; type=EST; length=945bp
GGGATCACCAGCAGCAACAGCAGCTTCAGCAACAACTCCAGTCTTTTTGG
GCCAATCAGTACCAAGAAATTGAAAAGGTTAATGATTTCAAGAATCATAG
CCTTCCTTTAGCAAGGATCAAGAAAATCATGAAGGCCGATGAGGATGTGA
GAATGATATCAGCTGAGGCACCTGTTATATTTGCAAGGGCATGTGAAATG
TTCATCTTGGAATTGACGCTGCGTTCCTGGAACCACACTGAAGAGAACAA
GAGGAGGACACTCCAAAAGAATGACATTGCGGCAGCAATAACTAGGACTG
ATATATTTGATTTCTTGGTTGACATTGTGCCTAGGGAGGACCTGAAAGAT
GAAGTACTTGCATCAATCCCGAGAGGAACCCTGCCTGTTGGGGGACCTCC
TGATATGCCGCCATATTGCTATATGCCAACTCAGCATGCTTCCCAGGTTG
GATCTGCTGGGATGATCATGGGTAAGCCTGTTATGGACCCTGCAATTTAC
GCCCAACAATCTCATCCCTATATGGGTCAACAGATGTGGCCCCAGGGAGC
AGACCAACAGCGGTCTCCTTCAGACCATTAGGTGCTGTAGCATCCAGTTA
GCGAAGAAATAAGAGGGAGTAGGGAGGCCCCTAGAAACCAAAAGCCCACT
GTTGAGTTTCAGGCAAAGAGAAGCAGACCTTTTGTAAATAATATATGTTT
TCGAAAGAGTAGCTAAACTTTTATTGGACCCTCTCGGGTGATCCTATTTC
CGGATTACTAGTCAGTAACCATTACTTAAAAGTTCATGTACAATTTATAT
ATTTTGAAAGAGTAGCTGATCTCGATCGAACCCTTTTTGTATCCTGGGTG
CTAACTTTTTCATTTATAGATTTAGTGATGGTTACTTTAGAAAGATGTAT
AAATAGAAATTTAAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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