CK938853

Overview
NameCK938853
Unique NameCK938853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938853 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.714e-27
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1
Query:    4 ADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 177
            AD+NTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILWKP
Sbjct:  300 ADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
BLAST of CK938853 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.545e-27
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1
Query:    4 ADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 177
            ADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  299 ADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356          
BLAST of CK938853 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.630e-27
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1
Query:    4 ADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 177
            ADINTFSWGVANRG+S+RVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  299 ADINTFSWGVANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CK938853 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 7.898e-27
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1
Query:    4 ADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 177
            ADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  299 ADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of CK938853 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.032e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1
Query:    4 ADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 177
            ADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE+TILWKP
Sbjct:  299 ADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356          
BLAST of CK938853 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.759e-26
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 1
Query:    4 ADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 177
            ADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  299 ADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CK938853 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.759e-26
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 1
Query:    4 ADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 177
            ADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILW P
Sbjct:  299 ADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356          
BLAST of CK938853 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.298e-26
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 1
Query:    7 DINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 177
            DINTFSWGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  300 DINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356          
BLAST of CK938853 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.298e-26
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 1
Query:    4 ADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 177
            ADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LW P
Sbjct:  299 ADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWNP 356          
BLAST of CK938853 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.001e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1
Query:    4 ADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 177
            ADINTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL KP
Sbjct:  298 ADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILLKP 355          
The following BLAST results are available for this feature:
BLAST of CK938853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
GLNA_PINSY2.714e-2794.83Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA1_ALNGL3.545e-2796.55Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA2_PHAVU4.630e-2794.83Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA1_LOTJA7.898e-2796.55Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA2_VITVI1.032e-2696.55Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA1_VITVI1.759e-2696.55Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLN11_ARATH1.759e-2694.83Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA3_MEDSA2.298e-2692.98Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLN12_ARATH2.298e-2694.83Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA1_PEA3.001e-2696.55Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004437_E10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938853 ID=CK938853; Name=CK938853; organism=Citrus sinensis; type=EST; length=524bp
GGGGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGAGGTGCCTC
CATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATACTTTGAAG
ACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTTCAATGATC
GCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTGAGCATGGA
TGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAACCCACCAC
AAAAATAATTCTTATGTTTTTATAATTTGTCTATGCATTTAAGTCTGTTG
TTTGAATTTGTTCCTTGCCATTCAAAACTGTACTCTGTTTCTCTTGTACT
TCATTGTTTGGGATGCTCAGTTGTGATTACTATATTATAGTTTAAAACTA
CTTCGCTTCTGTTTAAAAAGTAAAGAAGATTTATAGCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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