CK938848

Overview
NameCK938848
Unique NameCK938848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12617 contig Csv1_Contig12617:16..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK938848 vs. ExPASy Swiss-Prot
Match: Y3236_ARATH (Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.905e-33
Identity = 81/135 (60.00%), Postives = 93/135 (68.89%), Query Frame = 3 
Query:  183 ASSIVEGSERDLEKGIISPQLNQKSIGEXXXXXXXXXXXXXXXXXXXXXXNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNDVNXXGETALFTA 587
            ASS V+G ERD+EKG +    + ++                         NSGKR+DQAGKKKYVKQVTGRHNDTELHLAAQRGDL AV+QIL  I+SQM G LSG EFD EVAEIR+S+VN+VN  GETALFTA
Sbjct:    3 ASSYVDG-ERDMEKGGMILLQSSENQNPMIDPSPTPSPSATATAPALVLSNSGKRMDQAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEVNELGETALFTA 136
The following BLAST results are available for this feature:
BLAST of CK938848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3236_ARATH1.905e-3360.00Ankyrin repeat-containing protein At3g12360 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004437_E04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938848 ID=CK938848; Name=CK938848; organism=Citrus sinensis; type=EST; length=587bp
CCAAACACTTCATCCTCCATTTCCACCACCCTTCCTCCCACTTTCCTCTG
TTTCTTTTTTCTATTTTTCATGTCCTTTTGCCTTCATCTTATCTCCCTCT
CACTCTTACACTTCTCTTGAACCTTCTCATTTCTCTTCTATCTTGAATGA
TATCTAAGTTTTTCTCTTTCTAATCAACCATGGCCTCATCTATTGTAGAA
GGATCTGAGAGAGACCTTGAAAAGGGAATAATATCTCCACAATTAAACCA
AAAATCAATTGGTGAGTCATCACTAACACCGTCACCTTCCCCTTCACCGT
CTTCAGCAACAGCACCGGCTTTGGTGTTGTCCAACTCAGGCAAACGCATA
GACCAAGCTGGGAAAAAGAAGTATGTTAAACAAGTGACGGGTCGTCATAA
TGATACGGAGCTGCATTTGGCAGCTCAGCGAGGAGATTTGGGAGCAGTGA
AACAGATTCTTTATGGCATAGATTCACAAATGGTGGGGAACTTAAGTGGG
GCTGAATTTGATACTGAAGTTGCAGAGATAAGGTCATCGGTTGTGAATGA
TGTGAATNNNNTGGGAGAGACTGCCTTATTTACAGCT
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