CK938843

Overview
NameCK938843
Unique NameCK938843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10620 contig Csv1_Contig10620:427..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK938843 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.378e-14
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:   34 KSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTDTTACTEIEGLCNIPANYYGVSKFGILGLVKSLAAELGRHGIRVDCVS 297
            K D ER+LAVN +G FL  KHAARVM P RRG I+ T    ++       +    ++ Y  SK  ++G  ++ A ELGRHGIRV+CVS
Sbjct:  115 KEDFERVLAVNLVGPFLGTKHAARVMAPARRGSIISTASLSSS-------VSGAASHAYTTSKHALVGFTENAAGELGRHGIRVNCVS 195
[Close]
BLAST of CK938843 vs. ExPASy Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.676e-11
Identity = 41/95 (43.16%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:   37 SDLERLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTDTTACTEIEGLCNI--------PANYYGVSKFGILGLVKSLAAELGRHGIRVDCVS 297
            S+ E    VN  G FL  KHAARVM+P ++G I+               LC++        P +Y G SK  +LGL +S+AAELG+HGIRV+CVS
Sbjct:  123 SEFEMTFDVNVKGAFLSMKHAARVMIPEKKGSIV--------------SLCSVGGVVGGVGPHSYVG-SKHAVLGLTRSVAAELGQHGIRVNCVS 202
The following BLAST results are available for this feature:
BLAST of CK938843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MOMAS_ORYSJ3.378e-1446.59Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
ABA2_ARATH2.676e-1143.16Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004437_D10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938843 ID=CK938843; Name=CK938843; organism=Citrus sinensis; type=EST; length=586bp
GGGCGTGGCTTCGTGAGCATTTTGGACACCCCAAAGTCCGATCTAGAACG
TTTACTGGCTGTGAACACAATTGGTGGTTTCTTAGTAGCCAAGCATGCTG
CAAGAGTCATGGTGCCACGCCGCAGAGGTTGCATATTGTATACAACGGGT
ACAGACACTACTGCTTGTACGGAAATTGAAGGTTTGTGCAATATTCCAGC
TAATTATTATGGAGTGTCAAAATTTGGGATCTTGGGACTTGTCAAGAGCT
TAGCGGCAGAGCTTGGACGGCATGGAATAAGAGTAGATTGCGTATCGCAT
ACTTATGGCTTGGCAATGGCTGAAGCGATAGCATCAATAGCAAACGCTGC
GCTTTACAATATGGCTAAAGATGATGATACAAGTTATGTGGGTAAGCAAA
ATCTTCTTGTCAATGGAGGATTCAGATGAGAGTTGTGAATCCTACCCTCG
AAGAGAGCTTTCAATCGATGAAAAAAGTTTCTGAGTTTTTTAGCTTCATT
TTTCTCATATGTCAATTCAAAATTATGTGAGAATTGAATGATATAATTTT
GTAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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