CX675561

Overview
NameCX675561
Unique NameCX675561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11967 contig Csv1_Contig11967:162..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.745e-35
Identity = 106/272 (38.97%), Postives = 149/272 (54.78%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAA-RTFVLGGLSDKHFGLSNFWVA---------------DRINEIDTEALRILNLCYERA 763
            I IA+TNRPDILDPAL+RPGRFDR+IFIPKP + GR EILKVHAR K +A DVD   VA  T G  GA+L N++  AA+   R G+ EIT +++ +A      G L+RK    SP+   ++AI+EA  A++ +   D   +  ++I PR G  LG  +      K    +  ++ L + I V L  RAA+E++ G+  ++T        A   A R   + G+SDK   ++   VA               D + EID E  RI+   YE+A
Sbjct:  296 IVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPGFTGADLENLLNEAALLAARKGKEEITMEEIEEALDRITMG-LERKGMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR-GMALGVTQQLPIEDKH---IYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKA 562          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.439e-30
Identity = 84/226 (37.17%), Postives = 124/226 (54.87%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ--VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLG-GLSDK 670
            I +A+TNRPD+LD AL+RPGRFDR++ + +P   GR EIL VHAR K ++ DVD   +A  T G  GA+L+N++  AAI   R   TEI+ D++  A      G  ++K R     R+  VA +EA  A+V    PD   ++ ++I PR GR  G         + + G+ SR  L + + V L  R A+E+  GE +++T  +         AR  V   G+SD+
Sbjct:  301 IIVAATNRPDVLDSALMRPGRFDRQVVVDRPDYAGRREILNVHARGKTLSQDVDLDKIARRTPGFTGADLSNLLNEAAILAARRNLTEISMDEVNDAIDRVLAGP-EKKNRVMSEKRKTLVAYHEAGHALVGALMPDYDPVQKISIIPR-GRAGGLTWFTPSEDRMESGLYSRSYLQNQMAVALGGRIAEEIIFGEEEVTTGASNDLQQVARVARQMVTRFGMSDR 524          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.610e-29
Identity = 86/233 (36.91%), Postives = 135/233 (57.94%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGM--LDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDKHFGLSN 688
            I +A+TNRP+ILDPAL+RPGRFDR++ + KP   GR+EILKVH +   +A+DVD   +A +T G+ GA+LANI+  AA+   R+ + E+    L +A    ERG+  L++K R  SP+  + VA +E+  AV++        +  V+I PR    LGY     +  K+   ++ +  L+  I V L  RAA++++  E  +ST     A N    A   + G +S  ++G+S+
Sbjct:  318 IVLAATNRPEILDPALLRPGRFDRQVLVDKPDFKGRVEILKVHIKPVKLANDVDLQEIAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAV---ERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKY---LMQKHELIAEIDVLLGGRAAEDVFLQE--IST----GASNDLERATDIIKGMVS--YYGMSD 536          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.746e-29
Identity = 87/233 (37.34%), Postives = 135/233 (57.94%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGM--LDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDKHFGLSN 688
            I +A+TNRP+ILDPAL+RPGRFDR++ + KP   GR+EILKVH +   +A+DV+   VA +T G+ GA+LANI+  AA+   R+ + E+    L +A    ERG+  L++K R  SP+  + VA +E+  AV++        +  V+I PR    LGY     +  K+   ++ +  L+  I V L  RAA+E++  E  +ST     A N    A   + G +S  ++G+S+
Sbjct:  312 IVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAV---ERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSTRVNKVSIIPRGMAALGYTLNTPEENKY---LMQKHELIAEIDVLLGGRAAEEVFLEE--IST----GASNDLERATDIIKGMVS--YYGMSS 530          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.684e-29
Identity = 87/279 (31.18%), Postives = 138/279 (49.46%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAG-RELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDKHFGLSNF------------------------WVADRINEIDTEALRILNLCYERA 763
            I + +TNR DILD AL+RPGRFDR++ +  P  +GR+ ILKVHAR KP+ +DV  + +A+ T G  GA+LAN++  AAI   R  ++ IT +++ +AA     G+        +  R +A +E   A+          +E +T+ PR G + L +   + D     + +LSR +LL  I   L  RAA+++  GE +++T  +       + AR  V        FG+SN                         +  +  + ID E  +I+  CYE+A
Sbjct:  326 IVVGATNRADILDAALLRPGRFDRQVTVNLPDRLGRVGILKVHARNKPLGEDVSLVQLANRTPGFSGADLANLLNEAAILATRYKKSSITKNEVNEAADRIIGGIAGAPMEDTKNKRLIAYHEVGHAITGSVLKSHDEVEKITLTPRGGAKGLTWFTPEED-----QSLLSRSALLARIITTLGGRAAEQVIFGEPEVTTGASSDLQQVTNLARQMV------TRFGMSNIGPLALEDESTGQVFLGGNMASGSEYAENIADRIDDEVRKIITYCYEKA 593          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.684e-29
Identity = 88/246 (35.77%), Postives = 129/246 (52.44%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER----SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDKHFGLSNFWVADRINEIDTE 727
            I IA+TN P  LD ALVRPGRFDR I +P P + GR +IL+ H  K   +DDVD + +A  T G  GA+LAN+V VAA+    DG   +T +DL  A   ++R M+  + +    S E+ +  A +E   A+VA++    + +   TI PR GR LG V    +     E   SR+ +L  + V +A R A+EL  G+ ++++  +    NA   AR  V      K  G  ++   D    + TE
Sbjct:  360 IVIAATNFPQSLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMLKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYA---KDRIMMGSERKSAVISDESRKLTAYHEGGHALVAIHTEGARPVHKATIVPR-GRTLGMVSQLPEK---DETSFSRKQMLAWLDVSMAGRVAEELIFGDSEVTSGASSDFQNATKMARAMVTKYGMSKQLGFVSYNYEDDGKSMSTE 598          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.118e-29
Identity = 86/233 (36.91%), Postives = 135/233 (57.94%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGM--LDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDKHFGLSN 688
            I +A+TNRP+ILDPAL+RPGRFDR++ + KP   GR+EILKVH +   +A+DV+   VA +T G+ GA+LANI+  AA+   R+ + E+    L +A    ERG+  L++K R  SP+  + VA +E+  AV++        +  V+I PR    LGY     +  K+   ++ +  L+  I V L  RAA++++  E  +ST     A N    A   + G +S  ++G+S+
Sbjct:  312 IVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAV---ERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKY---LMQKHELIAEIDVLLGGRAAEDVFLEE--IST----GASNDLERATDIIKGMVS--YYGMSS 530          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.363e-28
Identity = 92/258 (35.66%), Postives = 139/258 (53.88%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLG-GLSDK--HFGLSNFWVADRINEIDTEALRILNLCYER 760
            I +A+TN PDILDPAL RPGRFDR I +P P + GR EIL+++ + KPM++DVD  A+A  T G  GA+LAN+V +AAI    +G  +++++ L  A      G  +RK    S ++ +  A +E+  A+VA+N      I   TI PR G  LG V     +    E  +S++ LL  + V +  R A+EL  G   ++T  +     A   A+  V   G+S+      +     +D  + ID E +++L   YER
Sbjct:  498 IVMAATNLPDILDPALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLSSEQLEFAKDRIVMG-TERKTMFVSEDSKKLTAYHESGHAIVALNTKGAHPIHKATIMPR-GSALGMVTQLPSN---DETSVSKRQLLARLDVCMGGRVAEELIFGLDHITTGASSDLSQATELAQYMVSSCGMSEAIGPVHIKERPSSDMQSRIDAEVVKLLREAYER 750          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.764e-28
Identity = 86/246 (34.96%), Postives = 128/246 (52.03%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER----SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDKHFGLSNFWVADRINEIDTE 727
            I IA+TN P+ LD ALVRPGRFDR I +P P + GR +IL+ H  K   +DDVD + +A  T G  GA+LAN+V VAA+    DG   +T +DL  A   ++R M+  + +    S E+ +  A +E   A+VA++      +   TI PR G  LG V    D     E  +SR+ +L  + V +  R A+EL  G+ ++++  +     A + AR  V      K  G  ++   D    + TE
Sbjct:  367 IVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYA---KDRIMMGSERKSAVISDESRKLTAYHEGGHALVAIHTEGAHPVHKATIVPR-GMALGMVAQLPDK---DETSVSRKQMLARLDVCMGGRVAEELIFGDSEVTSGASSDFQQATAVARAMVTKYGMSKQLGFVSYNYEDDGKSMSTE 605          
BLAST of CX675561 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.764e-28
Identity = 87/246 (35.37%), Postives = 127/246 (51.63%), Query Frame = 2
Query:    2 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER----SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDKHFGLSNFWVADRINEIDTE 727
            I +A+TN P+ LD ALVRPGRFDR I +P P + GR +IL+ H  K   A+DVD + +A  T G  GA+LAN+V VAA+    DG  ++T  DL  A   ++R M+  + +    S E+ +  A +E   A+VA++      +   TI PR G  LG V    D     E  +SR+ +L  + V +  R A+EL  GE ++++  +   + A   AR  V      K  GL      D    + TE
Sbjct:  364 IVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGSKDVTMSDLEFA---KDRIMMGSERKSAVISDESRKLTAFHEGGHALVAIHTEGALPVHKATIVPR-GMALGMVSQLPDK---DETSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDLEQATKLARAMVTKFGMSKEVGLVAHNYDDNGKSMSTE 602          
The following BLAST results are available for this feature:
BLAST of CX675561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
FTSH_AQUAE9.745e-3538.97Cell division protease ftsH homolog OS=Aquifex aeo... [more]
FTSH4_SYNY39.439e-3037.17Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH_HELFE1.610e-2936.91Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPJ2.746e-2937.34Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_ODOSI4.684e-2931.18Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH4_ORYSJ4.684e-2935.77Cell division protease ftsH homolog 4, mitochondri... [more]
FTSH_HELPY6.118e-2936.91Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSHB_ARATH1.363e-2835.66Cell division protease ftsH homolog 11, chloroplas... [more]
FTSH5_ORYSJ6.764e-2834.96Cell division protease ftsH homolog 5, mitochondri... [more]
FTSH4_ARATH6.764e-2835.37Cell division protease ftsH homolog 4, mitochondri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_63B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63B02-C3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675561 ID=CX675561; Name=CX675561; organism=Citrus sinensis; type=EST; length=764bp
GATCACTATAGCTTCCACAAATAGACCTGATATTCTAGATCCAGCCCTTG
TGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTGGCCTT
ATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCAATGGC
TGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAATGGTTG
GTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGATGCGT
GATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCACAAAT
AGAAGAGAGGGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGACATGGA
GACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGAACTTC
CCTGACCTTAAAAATATTGAGTTTGTAACGATTGCTCCTCGAGCTGGTAG
GGAGTTGGGTTATGTTCGTATGAAAATGGACCACATGAAATTTAAGGAAG
GTATGCTAAGTCGACAATCCTTGTTGGATCATATCACCGTTCAACTAGCA
CCACGTGCAGCTGATGAGCTTTGGTGTGGCGAGGGCCAGCTGAGTACAAT
ATGGGCAGAAACAGCAGACAATGCTAGGTCAGCAGCACGGACCTTTGTTC
TTGGTGGACTTTCTGACAAGCATTTTGGGTTATCTAACTTCTGGGTGGCA
GATCGAATTAACGAAATTGATACTGAGGCATTGCGGATTCTGAACTTATG
TTATGAACGTGCAA
back to top