CK938830
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK938830 vs. ExPASy Swiss-Prot
Match: EXOS3_DICDI (Putative exosome complex exonuclease rrp40 OS=Dictyostelium discoideum GN=exosc3 PE=3 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 7.821e-44 Identity = 97/211 (45.97%), Postives = 132/211 (62.56%), Query Frame = 2 Query: 134 LVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK-YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSE 763 L D+ VVPGDV+ + + +++G GL Q D+V KAG LR+SK ++ YW+E+ QKRYVP VED V+G +++ A++F VDI A L +FEG T+ N P +G+L+Y RV AN M PE+ C KA FG L GYM S GLS LLS C +L+ LGK + +EIAVG+NGRVW+N+ S ++VSN I NS+ Sbjct: 4 LKDQFVVPGDVIGKIGDLK---VRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQKRYVPQVEDMVIGTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCRVTVANRDMEPEVVCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSE-DCFLLQILGKHIPYEIAVGVNGRVWINSGSNHNTIVVSNTIYNSQ 210
BLAST of CK938830 vs. ExPASy Swiss-Prot
Match: EXOS3_MOUSE (Exosome complex exonuclease RRP40 OS=Mus musculus GN=Exosc3 PE=2 SV=3) HSP 1 Score: 154.836 bits (390), Expect = 5.429e-37 Identity = 88/225 (39.11%), Postives = 134/225 (59.56%), Query Frame = 2 Query: 137 VDKIVVPGDVVLDLSSMTNQTIKL--GGGLRQECDSVSVIKAGKLRFSKPNK-----YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQK 787 VD + G+ L L++ +++ G GLR+ D + V K G+LR +P+ YWV+S QKRYVP D V+GIV+ D F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++ELGK EI G+NGR+WV A++ ++++N + E ++ Q+K Sbjct: 42 VDGLGGAGEQPLRLNAGARPRLRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGDHVIGIVIAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIVQELGKLYPLEIVFGMNGRIWVKAKTIQQTLILANVLEACEHMTTEQRK 265
BLAST of CK938830 vs. ExPASy Swiss-Prot
Match: EXOS3_BOVIN (Exosome complex exonuclease RRP40 OS=Bos taurus GN=EXOSC3 PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 5.429e-37 Identity = 85/213 (39.91%), Postives = 127/213 (59.62%), Query Frame = 2 Query: 170 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQK 787 L+ ++ + + G GLR+ D + V K G+LR +P YWV+S QKRYVP D V+GIV D F VD+ G A L LAFEG T+RN P ++G L+Y + V AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +L+E+GK EI G+NGR+WV A++ ++++N + E ++A Q+K Sbjct: 55 LNAAARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEILQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTADQRK 266
BLAST of CK938830 vs. ExPASy Swiss-Prot
Match: EXOS3_HUMAN (Exosome complex exonuclease RRP40 OS=Homo sapiens GN=EXOSC3 PE=1 SV=3) HSP 1 Score: 150.984 bits (380), Expect = 7.839e-36 Identity = 82/213 (38.50%), Postives = 126/213 (59.15%), Query Frame = 2 Query: 170 LDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNK------YWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDASGKAAEFGLL-KDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQK 787 L+ + + + G GLR+ D + V K G+LR +P YWV+S QKRYVP D V+GIV D F VD+ G A L L+FEG T+RN P ++G L+Y + V AN M PE+ C D+ G+A G++ +DG +F+ + GL R LL +P C +++E+GK EI G+NGR+WV A++ ++++N + E +++ Q+K Sbjct: 55 LNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRK 266
BLAST of CK938830 vs. ExPASy Swiss-Prot
Match: RRP40_SCHPO (Exosome complex component rrp40 OS=Schizosaccharomyces pombe GN=rrp40 PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.337e-35 Identity = 94/229 (41.05%), Postives = 133/229 (58.08%), Query Frame = 2 Query: 155 PGDVVLDLSSMTNQTIKLGGGL----RQECDSVSVIKAGKLRFSKPNKYWVESSQKRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDA-SGKAAEFGLLKDGYMFETSTGLSR---MLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIMNSESLSAVQQKIMVXXLLQRI 817 PG+ + D + +I+LG GL + + + V KAG+L + N ++S KRY+P D V+G ++ A+ + VDI IA L LAFE TR++ P +GSL+Y RV A+ M PEL C DA +GKAA +G LK+GYM TGLS L P +L+ LG + FEIAVG+NGRVWVN+E+ ST VL+ AI N E +S +Q L++++ Sbjct: 15 PGERIPDSIISQDGSIRLGPGLVFQKKDREEEIVVSKAGRLHQTGKNAMLIDSRTKRYIPATNDQVIGQIISRFAEGYRVDIGSAHIAQLNALAFENVTRKSRPNLNVGSLVYARVSLADRDMEPELECFDATTGKAAGYGELKNGYMI---TGLSLSHCRKLILPKNTLLQTLGSYIPFEIAVGMNGRVWVNSENLSTTVLICTAIRNCEFMSDEEQIKYCKDLIKKL 240
BLAST of CK938830 vs. ExPASy Swiss-Prot
Match: RRP40_YEAST (Exosome complex component RRP40 OS=Saccharomyces cerevisiae GN=RRP40 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.416e-23 Identity = 62/196 (31.63%), Postives = 105/196 (53.57%), Query Frame = 2 Query: 200 IKLGGGLRQECD----SVSVIKAGKLRFSKPNKYWVES-----SQKRYVPCVEDTVLGIVVDCKADNFFVDIRG-PTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRVVKANPGMNPELSCTDAS-GKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSFEIAVGLNGRVWVNAESPSTVVLVSNAIM 754 +KLG G+ CD + + G L S K V++ S KRY+P V D V+G+++ +D++ V ++ + L +AF +++N P ++G L+Y RV A + E+ C D++ G+ A FG+L+DG + + + +R LL + P+L+ L FE+A+GLNG++WV E S + IM Sbjct: 19 VKLGPGIY--CDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNFNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEELSNTLACYRTIM 212 The following BLAST results are available for this feature:
BLAST of CK938830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK938830 ID=CK938830; Name=CK938830; organism=Citrus sinensis; type=EST; length=842bpback to top |