CK938774

Overview
NameCK938774
Unique NameCK938774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2130 contig Csv1_Contig2130:1..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938774 vs. ExPASy Swiss-Prot
Match: NDI1_YEAST (Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae GN=NDI1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.821e-15
Identity = 41/104 (39.42%), Postives = 66/104 (63.46%), Query Frame = 2
Query:  566 EKPRVVVLGTGWGACRFLKGIDTKIYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGFDTDKHEVYCETVNNGKLSHEP 877
            +KP V++LG+GWGA  FLK IDTK Y+V  ISPR++ +FTPLL S  VGT++ +S+ EP+  +  +L    N  +Y A     + D++ V  ++++     ++P
Sbjct:   52 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPI--VNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQP 153          
BLAST of CK938774 vs. ExPASy Swiss-Prot
Match: NDH_DICDI (Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.990e-15
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  566 EKPRVVVLGTGWGACRFLKGIDTKIYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCI 808
            E  ++++LG GWG+  FLK +++  YD+  ISPRNH +FTPLL S+ VGTLEFRS+AEPV       + D N + Y+ + +
Sbjct:   38 ENEKLIILGCGWGSYSFLKNLNSIKYDITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPV-----RTTRDINEFKYIQASV 113          
BLAST of CK938774 vs. ExPASy Swiss-Prot
Match: NDH1_YEAST (External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae GN=NDE1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 37/90 (41.11%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  566 EKPRVVVLGTGWGACRFLKGIDTKIYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGFDTDKHEV 835
            ++  +V+LG+GWG+   LK +DT +Y+VV +SPRN+ +FTPLL ST VGT+E +S+ EPV  I  +  S    ++Y A     D +   +
Sbjct:  111 KRKTLVILGSGWGSVSLLKNLDTTLYNVVVVSPRNYFLFTPLLPSTPVGTIELKSIVEPVRTI--ARRSHGEVHYYEAEAYDVDPENKTI 198          
BLAST of CK938774 vs. ExPASy Swiss-Prot
Match: NDH2_YEAST (External NADH-ubiquinone oxidoreductase 2, mitochondrial OS=Saccharomyces cerevisiae GN=NDE2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  566 EKPRVVVLGTGWGACRFLKGIDTKIYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASCIGFDTDKHEVYCETVN 853
            +K  +V+LGTGWGA   LK +DT +Y+V  +SPR+  +FTPLL ST VGT+E +S+ EPV  I       P    Y+ A  +  D    +V  ++V+
Sbjct:   96 KKKELVILGTGWGAISLLKKLDTSLYNVTVVSPRSFFLFTPLLPSTPVGTIEMKSIVEPVRSI---ARRTPGEVHYIEAEALDVDPKAKKVMVQSVS 189          
BLAST of CK938774 vs. ExPASy Swiss-Prot
Match: NDH2_SCHPO (Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC947.15c PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  569 KPRVVVLGTGWGACRFLKGIDTKIYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGFDTDKHEV 835
            K  +VVLG+GWGA   +K +D  +Y++  +SPR+H +FTP+L S  VGTL   S+ EP+  +      DP S  + A C   DT   +V
Sbjct:   90 KKNIVVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTLRLPSITEPIVALFKG-KIDP-SNIHQAECTAIDTSAKKV 176          
BLAST of CK938774 vs. ExPASy Swiss-Prot
Match: NDH1_SCHPO (Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC3A11.07 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  569 KPRVVVLGTGWGACRFLKGIDTKIYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGFDTDKHEVY 838
            K  +VVLG GWGA   L+ IDT +++V+ +SPRN+ +FT LL ST  G++  RS+ +P+  +    S      FY A C   D DK  ++
Sbjct:   91 KKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSVHTRSIVQPIRYMLRHKSCYVK--FYEAECTDVDADKKVIH 178          
The following BLAST results are available for this feature:
BLAST of CK938774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NDI1_YEAST3.821e-1539.42Rotenone-insensitive NADH-ubiquinone oxidoreductas... [more]
NDH_DICDI4.990e-1546.91Probable NADH dehydrogenase OS=Dictyostelium disco... [more]
NDH1_YEAST9.411e-1441.11External NADH-ubiquinone oxidoreductase 1, mitocho... [more]
NDH2_YEAST2.096e-1341.24External NADH-ubiquinone oxidoreductase 2, mitocho... [more]
NDH2_SCHPO2.318e-1240.45Probable NADH-ubiquinone oxidoreductase C947.15c, ... [more]
NDH1_SCHPO2.318e-1240.00Probable NADH-ubiquinone oxidoreductase C3A11.07, ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004438_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938774 ID=CK938774; Name=CK938774; organism=Citrus sinensis; type=EST; length=898bp
GGACACTTAAAACAGTTTGAGCCAAACTAATGCAAAACAAAACATAACGC
ATCTACTCTGCTTATTGTTGTTATTTGTAGTCTATAAAGCCGCAATCTTT
TGTGTTTAAAATTAAGGTGCTCCAGAAATTTTGGAAACCTCCAGAAATTT
TGGACACGATTCACTCTCTTTCATTCTTCGAGTTTAACAGTTTAAAGCTT
TGGTTACTAAATAGGGGTTTGCATTTAGAGCGGTCAGTCTCAACATGGCA
TTAGCAAGGTTAGCCAGGAGTGGTTTGAGAAGATCGGGAGGTGCTACCAG
CTGTTACTCACGTCAGAAGGATATAGGCATTGAGGGATTACCGACCAACA
AATGTTTCTCACCTTCCCTTGAAAATGTCTCACGAAATAGTAGTTTATCA
TACTTACCCAGCAGCATCAGGATGACAACTCATATGAGTTCTTGGAGCAG
GGGAATAAGGACAACCCCGCACTATCAATATCACAATGCAGAGAGAATTG
TGGAGGAGTCTGAATCAGAATATCAGGAACTAAGTTATCCAGGACTGGAA
GCGACCAAGCCAGGTGAAAAGCCAAGGGTGGTCGTCCTTGGTACCGGTTG
GGGTGCATGTCGATTCCTTAAAGGAATTGACACAAAGATTTATGATGTTG
TTTGCATATCCCCAAGGAATCACATGGTCTTCACACCTTTGCTTGCTTCA
ACTTGTGTTGGTACCCTGGAATTCCGCTCTGTAGCTGAGCCTGTTAGTCG
AATACAGACTTCATTGTCTTCAGATCCCAATTCATACTTCTACTTGGCTT
CCTGCATTGGCTTTGACACTGATAAACATGAAGTTTATTGTGAGACAGTC
AACAATGGCAAATTGTCCCATGAGCCTCACAAATTTNNNNTTGCGTAT
back to top