CX675549

Overview
NameCX675549
Unique NameCX675549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11014 contig Csv1_Contig11014:740..1495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675549 vs. ExPASy Swiss-Prot
Match: CWC22_DANRE (Pre-mRNA-splicing factor CWC22 homolog OS=Danio rerio GN=cwc22 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.585e-52
Identity = 96/154 (62.34%), Postives = 122/154 (79.22%), Query Frame = -3
Query:  293 GLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTRFAINFFTSIGQSGITENLREYLKNMPRLIMQQQKQV 754
            GLL  RFC++ K + E+FE  F +QY  IHRLETNKLRNVA+ FAHLL T ++PW VL  +R++E+ TTSSSRIF+KILFQEL  ++G+  LNERL D T+Q  FE +FPRDNP+NTRFAINFFTSIG  G+T+ LRE+LKN P++IM Q ++V
Sbjct:  602 GLLAGRFCLLKKEYMESFEAIFQEQYETIHRLETNKLRNVARIFAHLLYTDSVPWSVLECVRMSEDTTTSSSRIFVKILFQELCAYMGLPKLNERLKDTTLQPFFEGLFPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNAPKMIMTQNQEV 755          
BLAST of CX675549 vs. ExPASy Swiss-Prot
Match: CWC22_CHICK (Pre-mRNA-splicing factor CWC22 homolog OS=Gallus gallus GN=CWC22 PE=2 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.498e-51
Identity = 99/154 (64.29%), Postives = 120/154 (77.92%), Query Frame = -3
Query:  293 GLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTRFAINFFTSIGQSGITENLREYLKNMPRLIMQQQKQV 754
            GLL  RFCM+ K + E+FE  F +QY  IHRLETNKLRNVAK FAHLL T ++PW VL  I L+EE TTSSSRIF+KI FQELSE++G+  LN RL D T+Q  FE + PRDNP+NTRFAINFFTSIG  G+T+ LRE+LKN P++IM Q++ V
Sbjct:  511 GLLAGRFCMLKKEYMESFEAIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSIPWSVLECIILSEETTTSSSRIFVKIFFQELSEYMGLPNLNARLKDITLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNAPKMIMTQKQDV 664          
BLAST of CX675549 vs. ExPASy Swiss-Prot
Match: CWC22_PONAB (Pre-mRNA-splicing factor CWC22 homolog OS=Pongo abelii GN=CWC22 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.565e-51
Identity = 98/154 (63.64%), Postives = 119/154 (77.27%), Query Frame = -3
Query:  293 GLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTRFAINFFTSIGQSGITENLREYLKNMPRLIMQQQKQV 754
            GLL  RFCM+ K + E+FE  F +QY  IHRLETNKLRNVAK FAHLL T +LPW VL  I+L+EE TTSSSRIF+KI FQEL E++G+  LN RL D T+Q  FE + PRDNP+NTRFAINFFTSIG  G+T+ LRE+LKN P++I+ Q+  V
Sbjct:  508 GLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDV 661          
BLAST of CX675549 vs. ExPASy Swiss-Prot
Match: CWC22_MOUSE (Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus GN=Cwc22 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.565e-51
Identity = 97/153 (63.40%), Postives = 119/153 (77.78%), Query Frame = -3
Query:  296 GLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTRFAINFFTSIGQSGITENLREYLKNMPRLIMQQQKQ 754
            GLL  RFCM+ K + E+FE  F +QY  IHRLETNKLRNVAK FAHLL T +LPW VL  I+L+EE TTSSSRIF+KI FQEL E++G+  LN RL D T+Q  FE + PRDNP+NTRFAINFFTSIG  G+T+ LRE+LKN P++I+ Q+ +
Sbjct:  507 GLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPE 659          
BLAST of CX675549 vs. ExPASy Swiss-Prot
Match: CWC22_HUMAN (Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens GN=CWC22 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 5.565e-51
Identity = 98/154 (63.64%), Postives = 119/154 (77.27%), Query Frame = -3
Query:  293 GLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTRFAINFFTSIGQSGITENLREYLKNMPRLIMQQQKQV 754
            GLL  RFCM+ K + E+FE  F +QY  IHRLETNKLRNVAK FAHLL T +LPW VL  I+L+EE TTSSSRIF+KI FQEL E++G+  LN RL D T+Q  FE + PRDNP+NTRFAINFFTSIG  G+T+ LRE+LKN P++I+ Q+  V
Sbjct:  508 GLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDV 661          
BLAST of CX675549 vs. ExPASy Swiss-Prot
Match: CWC22_XENLA (Pre-mRNA-splicing factor CWC22 homolog OS=Xenopus laevis GN=cwc22 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.053e-49
Identity = 95/154 (61.69%), Postives = 117/154 (75.97%), Query Frame = -3
Query:  293 GLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTRFAINFFTSIGQSGITENLREYLKNMPRLIMQQQKQV 754
            GLL  RFC++ K + E FE  F +Q+  IHRLETNKLRNVAK FAHLL T +LPW VL  + L+EE TTSSSRIF+KI FQEL E++G+  LN RL D T+Q  F+ + P DNPKNTRFAINFFTSIG  G+T+ LRE+LKN P++IM Q++ V
Sbjct:  555 GLLAGRFCLLKKEYLEAFENIFKEQFETIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECMNLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDVTLQPFFQGLLPMDNPKNTRFAINFFTSIGLGGLTDELREHLKNAPKMIMTQKQNV 708          
BLAST of CX675549 vs. ExPASy Swiss-Prot
Match: CWC22_EMENI (Pre-mRNA-splicing factor cwc22 OS=Emericella nidulans GN=cwc22 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.585e-48
Identity = 89/145 (61.38%), Postives = 114/145 (78.62%), Query Frame = -3
Query:  320 GLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTRFAINFFTSIGQSGITENLREYLKNMPR 754
            GL+G+RF  IN++  + FE  F + Y  IHR ETN+LRN+A+FF H+L T AL WHVL+ I L EE+TTSSSRIFIKILFQ+L+EHLG+  L ER+TD  ++ SFE +FP DNP+NTRF+IN+FTSIG   +TE LRE+LKNMP+
Sbjct:  298 GLIGERFAKINRLWSDLFENAFAKYYDTIHRYETNRLRNIARFFGHMLSTDALGWHVLSVIHLNEEETTSSSRIFIKILFQDLAEHLGLPKLRERMTDELLRPSFEGLFPTDNPRNTRFSINYFTSIGFGVLTEELREFLKNMPK 442          
BLAST of CX675549 vs. ExPASy Swiss-Prot
Match: CWC22_DROME (Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster GN=ncm PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 7.039e-46
Identity = 87/147 (59.18%), Postives = 113/147 (76.87%), Query Frame = -3
Query:  314 GLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTRFAINFFTSIGQSGITENLREYLKNMPRLI 754
            GLL QRFC INK++   FE+ F   Y   HRL+TN+LRNV+KFFAHLL T A+ W VL  I+L E+DTTSSSRIFIKILFQEL+E++G+  LN +L D  + +S   +FP+DNP+NTRF+INFFTSIG  G+T++LR +LKN P+ +
Sbjct:  764 GLLAQRFCNINKIYIPPFEEIFKDTYQTTHRLDTNRLRNVSKFFAHLLFTDAISWDVLECIQLNEDDTTSSSRIFIKILFQELAEYMGLGKLNAKLKDDVLVESIAGLFPKDNPRNTRFSINFFTSIGLGGLTDDLRRFLKNAPKSV 910          
BLAST of CX675549 vs. ExPASy Swiss-Prot
Match: CWC22_ASPFU (Pre-mRNA-splicing factor cwc22 OS=Aspergillus fumigatus GN=cwc22 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.039e-46
Identity = 83/145 (57.24%), Postives = 113/145 (77.93%), Query Frame = -3
Query:  320 GLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTRFAINFFTSIGQSGITENLREYLKNMPR 754
            GL+G+RF  IN++  + FE  F + Y  IHR ETN+LRN+A+FF H+L T A+ WHV++ I L E++TTSSSRIFIKILFQ+L EHLG+  L ER+ D  ++ SFE +FP DNP+NTRF+IN+FTSIG   +TE++RE+LKN+P+
Sbjct:  481 GLIGERFAKINRLWSDLFEAAFAKYYDTIHRYETNRLRNIARFFGHMLSTDAIGWHVMSVIHLNEDETTSSSRIFIKILFQDLGEHLGLAKLQERMRDEILRPSFEGLFPLDNPRNTRFSINYFTSIGFGILTEDMREHLKNLPK 625          
BLAST of CX675549 vs. ExPASy Swiss-Prot
Match: CWC22_USTMA (Pre-mRNA-splicing factor CWC22 OS=Ustilago maydis GN=CWC22 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.514e-43
Identity = 75/152 (49.34%), Postives = 114/152 (75.00%), Query Frame = -3
Query:  299 GLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTRFAINFFTSIGQSGITENLREYLKNMPRLIMQQQK 754
            G +G+RFC +++   + F + F   Y  IHR ETN+LRN+A+FF HL  T ++ W  ++ I + EEDTTSSSRIF+KI+FQE+ + LG++ L ER  +P++Q++++ +FP DNPK+TRF+IN+FTSIG   +TE +REYLKN P+L++ Q++
Sbjct:  508 GNMGERFCKLHRKWADTFAQSFSNYYDTIHRYETNRLRNIARFFGHLFSTDSISWASMSVIHMNEEDTTSSSRIFVKIMFQEMQQQLGLKELAERFKEPSLQENWKGLFPTDNPKSTRFSINYFTSIGLGVLTEEMREYLKNAPKLLLAQRQ 659          
The following BLAST results are available for this feature:
BLAST of CX675549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CWC22_DANRE8.585e-5262.34Pre-mRNA-splicing factor CWC22 homolog OS=Danio re... [more]
CWC22_CHICK2.498e-5164.29Pre-mRNA-splicing factor CWC22 homolog OS=Gallus g... [more]
CWC22_PONAB5.565e-5163.64Pre-mRNA-splicing factor CWC22 homolog OS=Pongo ab... [more]
CWC22_MOUSE5.565e-5163.40Pre-mRNA-splicing factor CWC22 homolog OS=Mus musc... [more]
CWC22_HUMAN5.565e-5163.64Pre-mRNA-splicing factor CWC22 homolog OS=Homo sap... [more]
CWC22_XENLA3.053e-4961.69Pre-mRNA-splicing factor CWC22 homolog OS=Xenopus ... [more]
CWC22_EMENI2.585e-4861.38Pre-mRNA-splicing factor cwc22 OS=Emericella nidul... [more]
CWC22_DROME7.039e-4659.18Pre-mRNA-splicing factor CWC22 homolog OS=Drosophi... [more]
CWC22_ASPFU7.039e-4657.24Pre-mRNA-splicing factor cwc22 OS=Aspergillus fumi... [more]
CWC22_USTMA9.514e-4349.34Pre-mRNA-splicing factor CWC22 OS=Ustilago maydis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63A07-A13-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675549 ID=CX675549; Name=CX675549; organism=Citrus sinensis; type=EST; length=756bp
CCCCCCCTTTTTTTTTAGAAGGGTTGAAGCCCTTTTAAGATTTTACAGAT
TGGAACATTACATTTTAACTGTTTCTCTTCACAAATTCAAAGACTTGAGA
GACCTTTCACGACAGCAGCAGCAAGATAATGATTCAGTGTCTTCTCCTTC
GCTTACTGCGTCTTTTGTCTCGGTCGCTTTCATCAGAACTTGATGAATCC
TCCGACTTATACTGTGAGCTAGATGTGTCTGAGTCGGATGAATCAGAGCT
CTCAGATTCATCATCTGATTCTGAATCCGGCTCTGACTCAGATACTTGTT
TTTGTTGTTGCATGATAAGCCGTGGCATGTTCTTCAGGTATTCACGTAAA
TTCTCAGTGATACCACTTTGTCCAATTGATGTGAAAAAATTGATGGCAAA
TCGAGTGTTCTTGGGATTGTCCCTCGGAAAAATGGATTCAAATGAGTCTT
GCATTGTTGGATCTGTGAGCCGCTCATTGAGCAAACGGATACCAAGATGC
TCCGACAGTTCCTGGAAGAGAATCTTTATGAAAATACGGGAAGATGAAGT
GGTGTCCTCCTCTGTTAACCGTATGTAAGCTAAAACATGCCAAGGCAGAG
CATGGGTTCCAAGTAAATGAGCAAAAAATTTGGCCACATTACGTAATTTA
TTGGTTTCAAGTCGATGAATCATAGAATATTGCTGGACGAAGCATTTCTC
AAAATTTTCTTGATGGACTTTGTTTATCATGCAGAACCGTTGCCCCAATA
ATCCAT
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