CK938752

Overview
NameCK938752
Unique NameCK938752
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938752_ssr124 microsatellite CK938752_ssr124:124..135. BLAST: Citrus ESTs to Prunus persica proteins V1
CK938752_ssr277 microsatellite CK938752_ssr277:277..291. BLAST: Citrus ESTs to Prunus persica proteins V1
CK938752_ssr306 microsatellite CK938752_ssr306:306..317. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5981 contig Csv1_Contig5981:6..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK938752 vs. ExPASy Swiss-Prot
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 3.022e-57
Identity = 108/157 (68.79%), Postives = 127/157 (80.89%), Query Frame = 1 
Query:  346 TPDFPSQKIVGGIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXXXXXXEQIFPMLGMTPPP-WYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVA 813
            T DFP+QK  G +GYG+TV INFC SCSY+GTA++MK+MLE+ FPG+DVVLANYP P PKR+LAK                EQIFPM+G+  PP WY+SLRANRFGS+ASTWL+GNFLQSFLQSSGAFEV CN +LVFSKLKEGRFPGEIEL+DL++
Sbjct:   42 TLDFPAQKSTG-VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSKLKEGRFPGEIELRDLIS 197
[Close]
BLAST of CK938752 vs. ExPASy Swiss-Prot
Match: HSP6_HETGL (Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.588e-16
Identity = 45/145 (31.03%), Postives = 71/145 (48.97%), Query Frame = 1 
Query:  400 VNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXXXXXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQLASSR 834
            V  +FC SC YR       ++L  ++PGID+   NYPP + + + A+                   FP LG+  P ++  + +NR  +    +L  N ++  LQS+GAFE+Y   + ++SKL+ GR P   EL   +   LA  R
Sbjct:   83 VKFSFCVSCGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCVVSGRSPFPTLGLETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERIWSKLESGRVPSPPELFQAIDSHLAIRR 227
[Close]
BLAST of CK938752 vs. ExPASy Swiss-Prot
Match: SELT_DROME (SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.568e-13
Identity = 46/148 (31.08%), Postives = 67/148 (45.27%), Query Frame = 1 
Query:  379 GIGYGSTVNINFCASCSYRGTAITMKRMLETQFPGIDVVLANYPPPLPKRLLAKXXXXXXXXXXXXXXXXEQIFPMLGMTPPPWYYSLRANRFGSIASTWLIGNFLQSFLQSSGAFEVYCNDDLVFSKLKEGRFPGEIELKDLVAKQL 822
            G     T+   +C SC YR        +L  ++P I V   NY PP     L+K                   F  LG+  P W+  ++AN+  +    + +GN L++ L SSGAFE+  ND  V+SKL+ GRFP    L  ++   L
Sbjct:   37 GQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSKLQTGRFPSPEVLFQIIDNHL 184
The following BLAST results are available for this feature:
BLAST of CK938752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SELT_ARATH3.022e-5768.79SelT-like protein OS=Arabidopsis thaliana GN=At3g4... [more]
HSP6_HETGL2.588e-1631.03Putative esophageal gland cell secretory protein 6... [more]
SELT_DROME4.568e-1331.08SelT-like protein OS=Drosophila melanogaster GN=CG... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004438_H02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938752 ID=CK938752; Name=CK938752; organism=Citrus sinensis; type=EST; length=885bp
GGGGGAATTGAGAAATTGGGAGAGGAGACAATCGTCGAATATGGGTCGCT
ATTAAATAACCGAGATCCATCTACGAGACTACGACCCCGTGCCAAATTTT
AGTCAGTCACAGTCGGTCTATTTTTCTTCTTCTTCGAATTGTTGTTTTTC
TTTCACAGACTCGTAAAATCCCAACAAAATCATAGTTTTAATCTACAAAT
GGATCGGCTAAATATCCTTCTTCTGGGTCTCCCTCTCTTTCTTCTCTGCA
GCGACCTCTTAAATCTTTTCACTCCTCCGCCGCCGCCGCCGCCAAAATCC
GCTTCCCACCACCACCATAAACCGCCTATAACTTCAGAAAACCTAACCCC
AGACTTTCCTTCACAGAAAATTGTCGGAGGAATTGGGTATGGCAGTACTG
TTAATATCAACTTTTGTGCTTCTTGCTCTTATAGGGGCACTGCAATAACA
ATGAAAAGGATGTTGGAGACTCAGTTTCCTGGAATTGATGTGGTCCTTGC
AAATTATCCCCCACCCCTGCCAAAGCGTCTACTTGCTAAAGTGGTGCCTG
CTGTTCAGATAGGGGTTATTGGGATCGTAGTGGCAGGCGAACAGATTTTT
CCGATGCTGGGAATGACACCACCTCCATGGTATTATTCGCTGCGTGCCAA
TAGGTTTGGGTCCATAGCATCTACCTGGCTTATTGGAAACTTTTTGCAGT
CCTTCCTCCAAAGCTCTGGGGCTTTTGAAGTTTACTGTAATGATGACTTG
GTCTTCTCTAAACTGAAGGAGGGGAGGTTTCCAGGCGAGATTGAGCTAAA
AGATCTTGTTGCCAAACAATTGGCTTCATCAAGACTTGTGGATGGTGTTG
GAAGTGTATGGTCCTAGTTCATTCACTGGACATTG
back to top