CK938751

Overview
NameCK938751
Unique NameCK938751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:51..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938751 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 5.872e-75
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 3
Query:   48 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGDEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIIKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 473
            MGKTRGMGA RKLK+HRRRQRWADKSYKKSHLG+EWKKPFAGSSHAKGIVLEKIGIEAKQPNSAI KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CK938751 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.971e-74
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 3
Query:   48 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGDEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIIKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 473
            MGKT GMGA RKLKSHRR QRWADKSYKKSHLG+EWKKPFAGSSHAKGIVLEKIGIEAKQPNSAI KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CK938751 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 3.563e-72
Identity = 135/142 (95.07%), Postives = 136/142 (95.77%), Query Frame = 3
Query:   48 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGDEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIIKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 473
            MGKTRGMGAGRKLK  R  QRWADK YKKSHLG+EWKKPFAGSSHAKGIVLEKIGIEAKQPNSAI KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CK938751 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.655e-69
Identity = 132/142 (92.96%), Postives = 134/142 (94.37%), Query Frame = 3
Query:   48 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGDEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIIKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 473
            MGKTRGMGAGRKLK  R  QRWADK YKKS+ G+EWKKPFA SSHAKGIVLEKIGIEAKQPNSAI KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CK938751 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.149e-62
Identity = 115/143 (80.42%), Postives = 126/143 (88.11%), Query Frame = 3
Query:   48 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGDEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIIKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 473
            MGK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS
Sbjct:    1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143          
BLAST of CK938751 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.365e-62
Identity = 115/143 (80.42%), Postives = 125/143 (87.41%), Query Frame = 3
Query:   48 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGDEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIIKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 473
            MGK RG+   RK +SHRR QRW DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CK938751 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.695e-61
Identity = 112/143 (78.32%), Postives = 125/143 (87.41%), Query Frame = 3
Query:   48 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGDEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIIKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 473
            MGK RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CK938751 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.695e-61
Identity = 112/143 (78.32%), Postives = 125/143 (87.41%), Query Frame = 3
Query:   48 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGDEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIIKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 473
            MGK RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CK938751 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.232e-61
Identity = 114/143 (79.72%), Postives = 124/143 (86.71%), Query Frame = 3
Query:   48 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGDEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIIKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 473
            MGK RG+   RK  +HRR QRWADK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQLIKNGKKI AFVP DG LNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CK938751 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.404e-60
Identity = 111/143 (77.62%), Postives = 125/143 (87.41%), Query Frame = 3
Query:   48 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGDEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIIKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 473
            MGK +G+ A RKLK+HR+ QRW DK YKK+HLG  WK  PF  +SHAKGIVLEK+G+EAKQPNSAI KC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:    1 MGKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
The following BLAST results are available for this feature:
BLAST of CK938751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_FRAAN5.872e-7597.1840S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES4.971e-7496.4840S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH3.563e-7295.0740S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH1.655e-6992.9640S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU1.149e-6280.4240S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_DERVA4.365e-6280.4240S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_SPOFR3.695e-6178.3240S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA3.695e-6178.3240S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_DROME8.232e-6179.7240S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_BRUMA1.404e-6077.6240S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004438_G12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938751 ID=CK938751; Name=CK938751; organism=Citrus sinensis; type=EST; length=675bp
CTCCAAAGTCGTTCGTTACAGTATAAAATCCTCTTCGTAACGCCTACATG
GGGAAGACACGTGGAATGGGAGCTGGTCGCAAGCTGAAGAGCCACCGCAG
AAGACAAAGGTGGGCTGATAAGTCATACAAGAAATCCCACCTTGGCGATG
AATGGAAGAAGCCATTTGCTGGCTCTTCCCATGCAAAAGGCATTGTTCTT
GAGAAAATCGGTATCGAGGCAAAGCAGCCCAACTCTGCTATCATAAAATG
CGCTCGAGTTCAGCTGATCAAGAATGGAAAGAAGATTGCAGCTTTCGTAC
CAAACGATGGTTGTTTGAACTACATTGAAGAAAATGACGAGGTACTTATT
GCAGGATTTGGTCGAAAGGGGCATGCTGTGGGAGATATTCCTGGTGTTAG
ATTTAAGGTTGTCAAGGTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGG
AGAAGAAGGAGAAACCAAGATCCTAAACTCCTGATTCAAGATACTTCACC
ATGTTTTCTTTTTTTAGCACTTTATTTTCATTAATCCCTGTTGATTACTT
TTTTCCTTTATCATGTATTGCTGTTGAGAGAACTTTTTGGTTTTTTCCCT
CTGTTGAGACTATTAGTAAATTAGTATCTGTCTCTTCTACTTACGTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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