CK938747

Overview
NameCK938747
Unique NameCK938747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938747_ssr787 microsatellite CK938747_ssr787:787..798. BLAST: Citrus ESTs to TAIR9
Csv1_Contig7100 contig Csv1_Contig7100:902..1797. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CK938747 vs. ExPASy Swiss-Prot
Match: RK33_CITSI (50S ribosomal protein L33, chloroplastic OS=Citrus sinensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.278e-33
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2 
Query:  488 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 685
            MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK
Sbjct:    1 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 66
[Close]
BLAST of CK938747 vs. ExPASy Swiss-Prot
Match: RK33_BUXMI (50S ribosomal protein L33, chloroplastic OS=Buxus microphylla GN=rpl33 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.300e-31
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 2 
Query:  488 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 685
            MAKGK+VRVRVILECTSCVRNGVNKES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRVRVILECTSCVRNGVNKESLGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of CK938747 vs. ExPASy Swiss-Prot
Match: RK33_DRIGR (50S ribosomal protein L33, chloroplastic OS=Drimys granadensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 2 
Query:  488 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 685
            MAKGK+VR+RVILECTSCVRN +NKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRIRVILECTSCVRNDLNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of CK938747 vs. ExPASy Swiss-Prot
Match: RK33_CERDE (50S ribosomal protein L33, chloroplastic OS=Ceratophyllum demersum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.426e-31
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 2 
Query:  488 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 685
            MAKGK+VRVRVILECTSC RNG NKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHT HGEIKK
Sbjct:    1 MAKGKDVRVRVILECTSCARNGGNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTTHGEIKK 66
[Close]
BLAST of CK938747 vs. ExPASy Swiss-Prot
Match: RK33_CARPA (50S ribosomal protein L33, chloroplastic OS=Carica papaya GN=rpl33 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.877e-30
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 2 
Query:  488 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 685
            MAKGK+ RV +ILECTSCVRNGVNKES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDARVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of CK938747 vs. ExPASy Swiss-Prot
Match: RK33_EUCGG (50S ribosomal protein L33, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.202e-30
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:  488 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 685
            MAKGK+VRV VILECT+CVR G+NKESRG+SRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRVTVILECTNCVRTGLNKESRGVSRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of CK938747 vs. ExPASy Swiss-Prot
Match: RK33_PLAOC (50S ribosomal protein L33, chloroplastic OS=Platanus occidentalis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.462e-30
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 2 
Query:  488 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 685
            MAKGK+VRVRVILEC +CVRNGVNKES G+SRYITQKNRHNTPSRLELRKFCPYC+KHT+HGEIKK
Sbjct:    1 MAKGKDVRVRVILECINCVRNGVNKESPGVSRYITQKNRHNTPSRLELRKFCPYCFKHTIHGEIKK 66
[Close]
BLAST of CK938747 vs. ExPASy Swiss-Prot
Match: RK33_GOSHI (50S ribosomal protein L33, chloroplastic OS=Gossypium hirsutum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.133e-30
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 2 
Query:  488 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 685
            MAK K+VRV +ILECTSCVRNGVNKES GISRYITQKNRHNTPSRLEL+KFCPYCYKHT+HGEIKK
Sbjct:    1 MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of CK938747 vs. ExPASy Swiss-Prot
Match: RK33_GOSBA (50S ribosomal protein L33, chloroplastic OS=Gossypium barbadense GN=rpl33 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.133e-30
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 2 
Query:  488 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 685
            MAK K+VRV +ILECTSCVRNGVNKES GISRYITQKNRHNTPSRLEL+KFCPYCYKHT+HGEIKK
Sbjct:    1 MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of CK938747 vs. ExPASy Swiss-Prot
Match: RK33_PANGI (50S ribosomal protein L33, chloroplastic OS=Panax ginseng GN=rpl33 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.316e-30
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 2 
Query:  488 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 685
            MAKGK+VR+ VILECTSCVRNGVNK S GISRYITQKNRHNTP+RLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRITVILECTSCVRNGVNKVSTGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIKK 66
The following BLAST results are available for this feature:
BLAST of CK938747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
RK33_CITSI5.278e-33100.0050S ribosomal protein L33, chloroplastic OS=Citrus... [more]
RK33_BUXMI1.300e-3195.4550S ribosomal protein L33, chloroplastic OS=Buxus ... [more]
RK33_DRIGR3.782e-3192.4250S ribosomal protein L33, chloroplastic OS=Drimys... [more]
RK33_CERDE8.426e-3193.9450S ribosomal protein L33, chloroplastic OS=Cerato... [more]
RK33_CARPA1.877e-3090.9150S ribosomal protein L33, chloroplastic OS=Carica... [more]
RK33_EUCGG3.202e-3089.3950S ribosomal protein L33, chloroplastic OS=Eucaly... [more]
RK33_PLAOC5.462e-3089.3950S ribosomal protein L33, chloroplastic OS=Platan... [more]
RK33_GOSHI7.133e-3089.3950S ribosomal protein L33, chloroplastic OS=Gossyp... [more]
RK33_GOSBA7.133e-3089.3950S ribosomal protein L33, chloroplastic OS=Gossyp... [more]
RK33_PANGI9.316e-3089.3950S ribosomal protein L33, chloroplastic OS=Panax ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004438_G07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938747 ID=CK938747; Name=CK938747; organism=Citrus sinensis; type=EST; length=896bp
GGGGAACGGGGTGAAGAAGATTAGAGCTAGAATCAAATATTTGTGACTAA
TCTCTCTTTCCCCTCTTTTCGTTTTTTTGTTTTACAATTAGAAAGAAGGA
AAGCGAAAGAAAAAAGGTGGCTTCAACCTCAGCGAAACCCGGGTTCAGGC
TCCGATTAAATTAATTATTAATTATCCAGTTAAAAGCAAATAGACAGGTA
AAAGAAAACGGAAATCGAAATATGGCTAGGGTAAGAGTATCCTCCACTAC
AAGATCCTTAAATGAAATACTGGACTGCGATTTAGCAATATAGTTAGAAA
TTCTTGTATTACTTATTATTTTTTATTTTGATTTCCTATTTATTTACTAT
ATTGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAGC
AACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAAT
AGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGTA
AAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAAC
GGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGAA
TCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTATT
GTTACAAGCATACACTTCATGGGGAGATAAAAAAATAGATAGAGTCAAGC
CGCGTGCTTTTGTGTCGCCCTTCCAAGGGACATGAAAAACTAATCTAGAT
ATATATCTAGATTATTTCATATATTTTAATAAAAACAAATAAATAAATCT
AGACAAACCAAATCCTATAATTGATTCTATAAATCATTTTTTGGTTTCAT
CGAAATGGGATTTTAGGGATAAGGAATAAACAAATTATGGATAAAA
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