CK938727

Overview
NameCK938727
Unique NameCK938727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5294 contig Csv1_Contig5294:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938727 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.923e-96
Identity = 177/197 (89.85%), Postives = 190/197 (96.45%), Query Frame = 1
Query:  100 DPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTDARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 690
            DP+Q   +VKLFNRW+F+DVQ++D+SL DYIGV  +KHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYL+TT ARE+AFRNIK+IAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    3 DPTQ--IEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197          
BLAST of CK938727 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 352.058 bits (902), Expect = 1.923e-96
Identity = 179/207 (86.47%), Postives = 191/207 (92.27%), Query Frame = 1
Query:   70 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTDARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 690
            MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAKHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LITT ARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of CK938727 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 4.737e-95
Identity = 175/207 (84.54%), Postives = 190/207 (91.79%), Query Frame = 1
Query:   70 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTDARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 690
            MA +    ++   Q   +VKLFNRW+F+DV V DISL DYIGVQ +KHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TT ARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of CK938727 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 312.383 bits (799), Expect = 1.689e-84
Identity = 156/205 (76.10%), Postives = 181/205 (88.29%), Query Frame = 1
Query:   76 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTDARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 690
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ T ARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CK938727 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 312.383 bits (799), Expect = 1.689e-84
Identity = 156/205 (76.10%), Postives = 181/205 (88.29%), Query Frame = 1
Query:   76 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTDARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 690
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ T ARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CK938727 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 309.686 bits (792), Expect = 1.095e-83
Identity = 151/190 (79.47%), Postives = 174/190 (91.58%), Query Frame = 1
Query:  121 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTDARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 690
            D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ T ARE+AFRNIK IAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CK938727 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 305.834 bits (782), Expect = 1.581e-82
Identity = 153/205 (74.63%), Postives = 178/205 (86.83%), Query Frame = 1
Query:   76 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTDARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 690
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+   FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ T ARE+AFRNIKTIAECLADELINA KGSSNSYAIKKKDE+ERVAK+NR
Sbjct:    6 TATPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of CK938727 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 305.449 bits (781), Expect = 2.064e-82
Identity = 147/189 (77.78%), Postives = 173/189 (91.53%), Query Frame = 1
Query:  124 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTDARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 690
            VKLFNRW++EDV++ DISL+DYI +++     Y+PH+AGRY+ KRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TDQNPIQ+ VDA++N GPRED+TRIGSAG VRRQAVD+SPLRRVNQAI L+TT ARE++FRN+K+IAECLA+ELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   28 VKLFNRWSYEDVEIRDISLTDYIQIRSP---VYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 213          
BLAST of CK938727 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 6.641e-81
Identity = 153/207 (73.91%), Postives = 178/207 (85.99%), Query Frame = 1
Query:   70 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTDARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 690
            + T VV+ ++ P     ++KLF RW+ +DV VNDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT SLMM GRNNGKKLMA RIVKH+ EIIHLLT +NP+Q++V A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ T ARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct:   28 LETNVVSTTELP-----EIKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228          
BLAST of CK938727 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.636e-79
Identity = 142/190 (74.74%), Postives = 171/190 (90.00%), Query Frame = 1
Query:  121 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTDARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 690
            D+KLF +W  E + ++DISL+DYI V+   HA Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+L+ T ARE++FRNIK+IAECLADELINAA+GSSNSYAIKKKDE+ERVAK+NR
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210          
The following BLAST results are available for this feature:
BLAST of CK938727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_CICAR1.923e-9689.8540S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS52_ARATH1.923e-9686.4740S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS51_ARATH4.737e-9584.5440S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_HUMAN1.689e-8476.1040S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN1.689e-8476.1040S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_MOUSE1.095e-8379.4740S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_RAT1.581e-8274.6340S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_NEUCR2.064e-8277.7840S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5A_DROME6.641e-8173.9140S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_PODCA1.636e-7974.7440S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_A08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938727 ID=CK938727; Name=CK938727; organism=Citrus sinensis; type=EST; length=747bp
GGGGGTATCGTAACACTCAGGAAGAACTCAGCGAGCGGCAGCCGATTCTT
ATTACTTTATCTCTCGGGAATGGCGACTGCTGTAGTGGCACAATCTCAAG
ACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGACTTTC
GAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGTGCA
AGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTCAG
TTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGAAC
TCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCCGTCAG
GATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACCGACCAGAACC
CAATTCAAGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGAT
GCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATAT
TTCCCCATTGCGCCGTGTGAATCAAGCGATCTATCTAATCACCACTGATG
CTCGTGAATCTGCTTTTCGTAACATCAAGACTATTGCCGAATGCTTGGCC
GATGAACTCATTAATGCTGCCAAGGGTTCATCTAACAGCTATGCGATCAA
GAAGAAGGATGAGATTGAGAGAGTGGCAAAGGCCAATCGCTGAGGTCGTG
ATAGTGGAGAAGCAGATGCAGAAAGTTGTACTTTTTTAAAAAAAAAA
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