CK938665

Overview
NameCK938665
Unique NameCK938665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938665_ssr43 microsatellite CK938665_ssr43:43..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12372 contig Csv1_Contig12372:23..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 1.655e-107
Identity = 179/223 (80.27%), Postives = 194/223 (87.00%), Query Frame = 3
Query:  153 VPSTPMKVESDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAG 821
            VP    K E DPLKRVP  KP F+LSQ+KKAIPPHCF+RSVLRSFSYVV+DLTIAF  YY+A  Y H LP PLS+    +YWA+QGCILTGVWV+AHECGHHAFSDYQ LDD VGLILH  LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPKQK+ I WY+KYLNNP GRV+TL VTLTLGWPLYLA NVSGRPYDRFACH+DPYGPIYSDRERLQI+ISDAG
Sbjct:    9 VPPANRKSEVDPLKRVPFEKPQFSLSQIKKAIPPHCFQRSVLRSFSYVVYDLTIAFCLYYVATHYFHLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLTLAVTLTLGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAG 231          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 1.712e-104
Identity = 167/223 (74.89%), Postives = 190/223 (85.20%), Query Frame = 3
Query:  153 VPSTPMKVESDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAG 821
            VP++  K E+D  KRVPC KPPF++  +KKAIPPHCF+RS+ RSFSY++ D+ IA  FYY+A  Y   LP PLSYLAWP+YWA QGC+LTG+WV+AHECGHHAFSDYQWLDDTVGLI H  LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPKQK+AI WY KYLNNPLGR++ LTV   LGWPLYLAFNVSGRPYD FACHF P  PIY+DRERLQI++SDAG
Sbjct:    9 VPTSSKKSETDTTKRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYLISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQFVLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAG 231          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 1.039e-101
Identity = 165/224 (73.66%), Postives = 189/224 (84.38%), Query Frame = 3
Query:  153 VPSTPMKVESDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPY-DRFACHFDPYGPIYSDRERLQIFISDAG 821
            V  +P K E+D LKRVPC  PPFT+ ++KKAIPPHCF+RS+ RSFSY++ D+ +A  FYY+A TY   LPHPLSY+AWP+YWA QG +LTGVWV+AHECGHHAFSDYQWLDDTVGLI H  LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPK+K+ I WY KYLNNPLGR + LTV  TLGWPLY AFNVSGRPY + FACHF P  PIY+DRERLQI++SDAG
Sbjct:    9 VSPSPKKSETDTLKRVPCETPPFTVGELKKAIPPHCFKRSIPRSFSYLIWDIIVASCFYYVATTYFPLLPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSDIKWYGKYLNNPLGRTVMLTVQFTLGWPLYWAFNVSGRPYPEGFACHFHPNAPIYNDRERLQIYVSDAG 232          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.552e-97
Identity = 157/210 (74.76%), Postives = 181/210 (86.19%), Query Frame = 3
Query:  186 PLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISD 815
            PL RVP +KPPFT+ Q+KKAIPPHCF+RS+L SFSYVV+DL+ AFIFY IA TY H LP P S +AWP+YW LQGC+LTGVWV+AHECGHHAFS YQW+DD VGL LH  LLVPYFSWK SHRRHHSNTGSLDRDEVFVPK K+ + W++KYLNNPLGR ++L VTLT+GWP+YLAFNVSGRPYD FA H+ PY PIYS+RERL I++SD
Sbjct:   25 PLSRVPNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFY-IATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSD 233          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 3.474e-81
Identity = 131/217 (60.37%), Postives = 164/217 (75.58%), Query Frame = 3
Query:  171 KVESDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAG 821
            +    PL       PPFT+S +K+AIPPHCF+RSV+RS  Y+VHD  IA+IFY++AD YI  LP PL+YLAWP+YW  Q  ILTG+WV+ HECGHHAFSDYQW+DDTVG ILH  L+ PYFSWKYSHR HH+NT SLD DEV++PK K  +  Y K LN+P GR++ + +T TLG+PLYL  N+SG+ Y+RFA HFDP  PI+ +RER Q+ +SD G
Sbjct:    8 RTSQKPLMERVSVDPPFTVSDLKQAIPPHCFKRSVIRSSYYIVHDAIIAYIFYFLADKYIPILPAPLAYLAWPLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHANTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRLLIMFITFTLGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVLLSDLG 224          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.333e-48
Identity = 95/220 (43.18%), Postives = 131/220 (59.55%), Query Frame = 3
Query:  213 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAK--------------YLNN--PLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAG 821
            P FT+ ++++ IP HCFERS LR   +V  DLT A + + +A T I +  +PL  YLAWP YW +QG + TG+WV+AHECGH +FS  + L++TVG ILH  LLVPY SW+ SH +HH  TG + +D+VFVPK ++ +G   K              +L+   P+  +  + +    GWP YL  N SG+ Y R+  HF  Y PI+  R    I ISD G
Sbjct:   36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLF-LAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKESAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLG 254          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.333e-48
Identity = 95/220 (43.18%), Postives = 131/220 (59.55%), Query Frame = 3
Query:  213 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAK--------------YLNN--PLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAG 821
            P FT+ ++++ IP HCFERS LR   +V  DLT A + + +A T I +  +PL  YLAWP YW +QG + TG+WV+AHECGH +FS  + L++TVG ILH  LLVPY SW+ SH +HH  TG + +D+VFVPK ++ +G   K              +L+   P+  +  + +    GWP YL  N SG+ Y R+  HF  Y PI+  R    I ISD G
Sbjct:   36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLF-LAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKENAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLG 254          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.420e-35
Identity = 81/205 (39.51%), Postives = 116/205 (56.59%), Query Frame = 3
Query:  201 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTL-TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFIS 812
            P ++PPF +  ++ AIP HC+ +S LRS SYVV D+ IA     IA  Y+       S+  WP+YWA QG +   ++V+ H+CGH +FSD   L+  VG ILH  +LVPY  W+ SHR HH N G ++ DE +VP  +     Y K  ++   R++  TV L  L +PLYL +   G+       HF+PY  +++  ER  I  S
Sbjct:   28 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDI-IAVAALAIAAVYVD------SWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERV---YKKLPHST--RMLRYTVPLPMLAYPLYLCYRSPGKE----GSHFNPYSSLFAPSERKLIATS 216          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.848e-33
Identity = 74/207 (35.75%), Postives = 113/207 (54.59%), Query Frame = 3
Query:  201 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP---KQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFIS 812
            P + PPF L++++  IP HC+ +  LRS SYVV D+        IA        H  S+L +P+YWA+QG +   ++V+ H+CGH +FSD Q L++ VG ILH  +LVPY  W+ SH+ HH N G+++ DE +VP   K    +G+  K+L   +   +       L +P+YL     G+       HF+PY  ++   ER  +  S
Sbjct:   24 PSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAI-------HLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFLRYKIPFPL-------LAYPMYLMKRSPGKS----GSHFNPYSDLFQPHERKYVVTS 212          
BLAST of CK938665 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.284e-32
Identity = 77/206 (37.38%), Postives = 111/206 (53.88%), Query Frame = 3
Query:  201 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFIFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHPCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLG-RVITLTVTL-TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFIS 812
            P ++PPF +  ++ AIP HC+ +S LRS SYV  D+  A     +A  Y        S+  WP+YW  QG +   ++V+ H+CGH +FSD   L+  VG ILH  +LVPY  W+ SHR HH N G ++ DE +VP  +        Y N P   R++  TV L  L +P+YL +   G+       HF+PY  +++  ER  I  S
Sbjct:   25 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDI-FAVAALAMAAVYFD------SWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPEKL------YKNLPHSTRMLRYTVPLPMLAYPIYLWYRSPGKE----GSHFNPYSSLFAPSERKLIATS 213          
The following BLAST results are available for this feature:
BLAST of CK938665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FD6E2_SOYBN1.655e-10780.27Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH1.712e-10474.89Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU1.039e-10173.66Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN1.552e-9774.76Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL3.474e-8160.37Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORIS1.333e-4843.18Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP1.333e-4843.18Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD3E_ARATH6.420e-3539.51Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_TOBAC7.848e-3335.75Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA2.284e-3237.38Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_G08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938665 ID=CK938665; Name=CK938665; organism=Citrus sinensis; type=EST; length=822bp
GAGAGCCGAACGTTTACAACTCACAACGCGGCCGGTGAAGGCGAGAGAGA
GAGAGGGAGGGAAAGTGAGGTCTCTCATTTTCTTCTTCTTTGCAGTCCAA
GTGCTTCGCTTCTTCAGGTTGAGGAACAATGGGTGCAGGTGGACGAATGG
CTGTACCTTCAACGCCCATGAAGGTGGAATCTGATCCCTTGAAGCGAGTT
CCATGCTCAAAGCCACCATTCACACTCAGCCAAGTAAAGAAAGCTATCCC
ACCTCACTGTTTTGAGCGGTCTGTTCTCCGTTCATTCTCCTACGTTGTTC
ATGACCTCACCATTGCCTTTATCTTTTACTACATTGCCGACACTTACATT
CACCAACTTCCTCACCCTCTCTCTTATCTGGCCTGGCCAGTTTACTGGGC
TCTTCAAGGCTGCATTTTAACTGGAGTTTGGGTTGTAGCTCATGAATGTG
GCCACCATGCCTTCAGTGACTATCAATGGCTTGACGACACTGTTGGCCTT
ATCCTCCACCCTTGCCTCCTTGTCCCCTACTTCTCTTGGAAGTATAGCCA
TCGCCGCCATCACTCCAATACAGGATCCCTTGATCGTGATGAAGTATTTG
TCCCCAAGCAAAAAACCGCCATTGGTTGGTACGCCAAGTACCTTAACAAC
CCACTTGGCCGAGTCATAACACTTACTGTCACCCTCACCCTTGGCTGGCC
TTTGTACCTGGCATTCAATGTATCCGGTAGGCCTTATGATAGATTTGCTT
GCCATTTTGATCCTTATGGCCCCATCTACTCAGACCGCGAGAGGCTCCAA
ATTTTCATTTCTGATGCTGGAA
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