CK938663

Overview
NameCK938663
Unique NameCK938663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2124 contig Csv1_Contig2124:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX1A_ARATH (RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.611e-56
Identity = 100/118 (84.75%), Postives = 100/118 (84.75%), Query Frame = 3
Query:  108 MATLDSDVPMIPVGEXXXXXXXXXXXXXXXRFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 461
            MATLDSDV MIP GE               RFEIKKWSAVALWAW IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct:    1 MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX1_SALSA (RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.919e-49
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 461
            RFE+KKW+AVALWAW IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX1_MOUSE (RING-box protein 1 OS=Mus musculus GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.919e-49
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 461
            RFE+KKW+AVALWAW IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX1_HUMAN (RING-box protein 1 OS=Homo sapiens GN=RBX1 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.919e-49
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 461
            RFE+KKW+AVALWAW IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX1B_ARATH (RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.507e-49
Identity = 92/118 (77.97%), Postives = 95/118 (80.51%), Query Frame = 3
Query:  108 MATLDSDVPMIPVGEXXXXXXXXXXXXXXXRFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 461
            MA+L+SDV M   GE               RFE+KKWSAVALWAW IVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct:    1 MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX1A_DROME (RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.276e-49
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 461
            RFE+KKW+AVALWAW IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Sbjct:   21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYGH 108          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX1_CAEEL (RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.779e-46
Identity = 78/88 (88.64%), Postives = 81/88 (92.05%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 461
            RFE+KKWSAVALWAW I VDNCAICRNHIMDLCIECQANQA+   +ECTVAWG CNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   23 RFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIECQANQAAGLKDECTVAWGNCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 110          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX1_DICDI (RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.287e-45
Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 458
            +FE+K+W+AVALW W IVVDNCAICRNHIMDLCIECQANQAS TSEECTVAWG+CNHAFHFHCISRWLK+RQVCPLDN +WEFQKYG
Sbjct:   17 KFEVKRWNAVALWIWDIVVDNCAICRNHIMDLCIECQANQASNTSEECTVAWGICNHAFHFHCISRWLKSRQVCPLDNRDWEFQKYG 103          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX1_SCHPO (RING-box protein pip1 OS=Schizosaccharomyces pombe GN=pip1 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.428e-44
Identity = 75/88 (85.23%), Postives = 79/88 (89.77%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 461
            RFEIKKW+AVALW W IVVDNCAICRNHIMDLCIECQAN  SA ++ECTVAWG CNHAFHFHCISRWL TR VCPLDN EWEFQ+YGH
Sbjct:   20 RFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCPLDNREWEFQRYGH 107          
BLAST of CK938663 vs. ExPASy Swiss-Prot
Match: RBX1B_DROME (RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.427e-36
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 3
Query:  198 RFEIKKWSAVALWAWGIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 458
            RF +KKW A A+W W + VDNCAICRNHIM+LCIECQA+  +A  +ECTVAWG CNHAFH+HCI+RWLKTR VCPLDN EW +QKYG
Sbjct:   36 RFVVKKWVAHAMWGWDVAVDNCAICRNHIMNLCIECQADP-NANQDECTVAWGECNHAFHYHCIARWLKTRLVCPLDNKEWVYQKYG 121          
The following BLAST results are available for this feature:
BLAST of CK938663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RBX1A_ARATH3.611e-5684.75RING-box protein 1a OS=Arabidopsis thaliana GN=RBX... [more]
RBX1_SALSA1.919e-4995.45RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=... [more]
RBX1_MOUSE1.919e-4995.45RING-box protein 1 OS=Mus musculus GN=Rbx1 PE=1 SV... [more]
RBX1_HUMAN1.919e-4995.45RING-box protein 1 OS=Homo sapiens GN=RBX1 PE=1 SV... [more]
RBX1B_ARATH2.507e-4977.97RING-box protein 1b OS=Arabidopsis thaliana GN=RBX... [more]
RBX1A_DROME4.276e-4994.32RING-box protein 1A OS=Drosophila melanogaster GN=... [more]
RBX1_CAEEL5.779e-4688.64RING-box protein 1 OS=Caenorhabditis elegans GN=rb... [more]
RBX1_DICDI1.287e-4587.36RING-box protein 1 OS=Dictyostelium discoideum GN=... [more]
RBX1_SCHPO2.428e-4485.23RING-box protein pip1 OS=Schizosaccharomyces pombe... [more]
RBX1B_DROME1.427e-3672.41RING-box protein 1B OS=Drosophila melanogaster GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004439_G06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938663 ID=CK938663; Name=CK938663; organism=Citrus sinensis; type=EST; length=679bp
GGGGAGTTGCAAAGATTGGGAGTCATTCGTTTGTTTTGCCATCTTTTCTC
TCTGTAGAGACCTAAACAAGCGTTCGTTGTTGGGTTTCCACAAGAATCGA
GAAAAAAATGGCGACCTTGGACTCAGACGTACCGATGATTCCAGTCGGAG
AGGCATCAAGCAGTGCAGGCCCTTCATCTTCCTCCAAGAAGCCTAAACGT
TTCGAGATCAAAAAATGGAGCGCCGTCGCCCTCTGGGCTTGGGGTATTGT
TGTCGATAATTGTGCGATTTGCAGGAACCACATCATGGATCTCTGCATCG
AGTGCCAGGCTAACCAAGCTAGCGCTACAAGCGAGGAATGCACTGTAGCT
TGGGGGGTTTGCAACCATGCATTTCACTTTCACTGCATCAGTCGATGGCT
GAAGACTCGTCAAGTTTGTCCATTGGATAACAGTGAGTGGGAGTTCCAGA
AGTATGGTCACTAGAGCCTTTGAGCCAGTTGAGTTTTGGATTCTGTCTGC
TATGTATTGCAGATTTCAAGTAGATATTATGGAAGACCCTGGACTTTCTG
TCAATTCTATTTGATGCTCTTTGTTATCTAAAATTCAGTTGGTTATGACT
TGGATTCTAAATCCTATATATGTTTGTGAAAATTAAGCCATAATTTCTGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top