CK938655

Overview
NameCK938655
Unique NameCK938655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938655_ssr296 microsatellite CK938655_ssr296:296..307. BLAST: Citrus ESTs to Prunus persica proteins V1
CK938655_ssr339 microsatellite CK938655_ssr339:339..350. BLAST: Citrus ESTs to Prunus persica proteins V1
CK938655_ssr561 microsatellite CK938655_ssr561:561..584. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: DDPS2_ARATH (Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana GN=At5g58770 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.776e-21
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+ E MP+HVA+IMDGN RWA+ RGL    GH AGV +L+E+VELC +WG++VLTVFAFS DNW+RP
Sbjct:   72 LHAELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDNWIRP 138          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_THEEB (Undecaprenyl pyrophosphate synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=uppS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.878e-17
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+R+ +PRHVAVIMDGN RWA+QR LP   GH+ GV +L++L+  C  WG++ LT +AFS +NW RP
Sbjct:   17 LDRDRLPRHVAVIMDGNGRWAKQRNLPRIMGHQRGVDTLKDLLRCCKDWGIEALTAYAFSTENWGRP 83          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS2_ANASP (Undecaprenyl pyrophosphate synthetase 2 OS=Anabaena sp. (strain PCC 7120) GN=uppS2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.453e-17
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+ + +P+H+AVIMDGN RWA  RGLP  AGH  G R+L+EL+  C  WG+K LT +AFS +NW RP
Sbjct:   18 LDPQKIPQHIAVIMDGNGRWATSRGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRP 84          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_ANAVT (Undecaprenyl pyrophosphate synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=uppS PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.184e-17
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L RE +P+HVAVIMDGN RWA+++GLP   GH+ GV +L++L+  C  WG++ LT +AFS +NW RP
Sbjct:   15 LKRELLPKHVAVIMDGNGRWAKRQGLPRIMGHKRGVDALKDLLRCCRDWGIQALTAYAFSTENWKRP 81          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS1_ANASP (Undecaprenyl pyrophosphate synthetase 1 OS=Anabaena sp. (strain PCC 7120) GN=uppS1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.184e-17
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L RE +P+HVAVIMDGN RWA+++GLP   GH+ GV +L++L+  C  WG++ LT +AFS +NW RP
Sbjct:   15 LKRELLPKHVAVIMDGNGRWAKRQGLPRIMGHKRGVDALKDLLRCCRDWGIQALTAYAFSTENWKRP 81          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_PSEPK (Undecaprenyl pyrophosphate synthetase OS=Pseudomonas putida (strain KT2440) GN=uppS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.464e-17
Identity = 38/63 (60.32%), Postives = 53/63 (84.13%), Query Frame = -2
Query:   84 AMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 272
            ++PRHVA+IMDGN RWA++R LP  AGH+AGV ++R ++E+C + GV+VLT+FAFS +NW RP
Sbjct:   11 SVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAKSGVEVLTLFAFSSENWQRP 73          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_SYNY3 (Undecaprenyl pyrophosphate synthetase OS=Synechocystis sp. (strain PCC 6803) GN=uppS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.136e-17
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+++ +P+HVAVIMDGN RWA+QRG+P   GH+ GV SL+ L+  C  WG+  LT +AFS +NW RP
Sbjct:   15 LDQQRLPQHVAVIMDGNGRWAKQRGMPRIMGHQRGVDSLKNLLRCCDDWGIAALTAYAFSTENWGRP 81          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_PSEAE (Undecaprenyl pyrophosphate synthetase OS=Pseudomonas aeruginosa GN=uppS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.217e-16
Identity = 38/62 (61.29%), Postives = 51/62 (82.26%), Query Frame = -2
Query:   84 MPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 269
            +PRHVA+IMDGN RWA++R LP  AGH+AGV ++R ++E+C   GV+VLT+FAFS +NW RP
Sbjct:   10 VPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRP 71          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_CLOPE (Undecaprenyl pyrophosphate synthetase OS=Clostridium perfringens GN=uppS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.217e-16
Identity = 36/67 (53.73%), Postives = 53/67 (79.10%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L  + MP+H+A+IMDGN RWA++RGLP + GH AGV++++ +V+ C + GVK LT++AFS +NW RP
Sbjct:   18 LIEDKMPKHIAIIMDGNGRWAKKRGLPRTMGHRAGVKTIKTIVKECDKLGVKYLTLYAFSTENWKRP 84          
BLAST of CK938655 vs. ExPASy Swiss-Prot
Match: UPPS_GLOVI (Undecaprenyl pyrophosphate synthetase OS=Gloeobacter violaceus GN=uppS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = -2
Query:   84 LNREAMPRHVAVIMDGNVRWARQRGLPSSAGHEAGVRSLRELVELCCRWGVKVLTVFAFSYDNWVRP 284
            L+   +PRHVA IMDGN RWA +R LP   GH+AGV +L+EL+  C  WG+  LTV+AFS +NW RP
Sbjct:   15 LDPNRLPRHVAAIMDGNGRWASKRNLPRVMGHQAGVSALKELLRCCKDWGIGALTVYAFSTENWKRP 81          
The following BLAST results are available for this feature:
BLAST of CK938655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
DDPS2_ARATH4.776e-2165.67Dehydrodolichyl diphosphate synthase 2 OS=Arabidop... [more]
UPPS_THEEB1.878e-1756.72Undecaprenyl pyrophosphate synthetase OS=Thermosyn... [more]
UPPS2_ANASP2.453e-1756.72Undecaprenyl pyrophosphate synthetase 2 OS=Anabaen... [more]
UPPS_ANAVT4.184e-1755.22Undecaprenyl pyrophosphate synthetase OS=Anabaena ... [more]
UPPS1_ANASP4.184e-1755.22Undecaprenyl pyrophosphate synthetase 1 OS=Anabaen... [more]
UPPS_PSEPK5.464e-1760.32Undecaprenyl pyrophosphate synthetase OS=Pseudomon... [more]
UPPS_SYNY37.136e-1755.22Undecaprenyl pyrophosphate synthetase OS=Synechocy... [more]
UPPS_PSEAE1.217e-1661.29Undecaprenyl pyrophosphate synthetase OS=Pseudomon... [more]
UPPS_CLOPE1.217e-1653.73Undecaprenyl pyrophosphate synthetase OS=Clostridi... [more]
UPPS_GLOVI2.076e-1656.72Undecaprenyl pyrophosphate synthetase OS=Gloeobact... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938655 ID=CK938655; Name=CK938655; organism=Citrus sinensis; type=EST; length=777bp
GGGGGTGGCTTTANNNTTAAGCAACAATTTTGCGTTAAAGATTAAAAAAA
GGGGGAACGGTCGAGAGCCAACTGCTTCACCTAAGGCCGAACCCAGTTAT
CATAAGAGAAAGCAAAAACGGTTAAAACTTTAACTCCCCATCGACAGCAA
AGCTCCACAAGCTCTCTCAAAGACCGTACGCCCGCCTCGTGTCCCGCAGA
GGACGGCAACCCTCGCTGCCGGGCCCACCTCACGTTGCCGTCCATTATGA
CCGCCACGTGTCTCGGCATCGCCTCCCTATTTAGTCCACCGGCAACTCCT
CCTCCTCCAGAGACAAATCTGAAATCCTCTCATTCGGACGCCGCCGCCGC
TGCTGCTCATTTTCCTTGACGGCAACTTCCGCGGAGCTCCCTCGAGCTCC
AACCTTGCGAAGAGAAAACGGAGGTGTGATGCGGGTTTGGGAGCGCGAAG
GATTGAGTTTCGGAGCAAAGAGAGTGTTTGGAACTGGAGAATTCACGTGC
AAGGATAACATTGTTCCGGTTTAAGCTAAGCCTTTTAGCGATGAACTAAC
TTGTCGTTTATTCTTCTTCTTCTTCTTCTTCTTCTTGATTTTCAGTTATT
CAGTTGTTGTTGCTGTTATATACTTGCCGCCACCTATGGCATTGATTTTG
ACTAGCTTGCCTACGGTGAAACGGAAGCGTTCTGAGCCTCGAGATTTTTA
GTGGACTGTGGACAAGCAGAGCGATGGAGGAGCAACGACATGAAACTTAG
TCGACTAGTTGCTCTCGCGGATAACTC
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