CK938654 | Citrus Genome Database

Overview


Name	CK938654
Unique Name	CK938654
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	783

Libraries


Library Name	Type
Developing fruit albedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7334	contig	Csv1_Contig7334:133..915.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: PUM2_MOUSE (Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.651e-51
Identity = 97/179 (54.19%), Postives = 130/179 (72.63%), Query Frame = 1

Query:    4 IVTTFFDQVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTD-ENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 537
            I+  F  QV  LSTHPYGCRVIQRILEHC   +T   +++E+      L QDQYGNYV+QHVLEHG+P ++S I+ E+ GK++ +SQ KFASNVVEKC+T     ER LL+DE+    D  +  L  MMKDQ+ANYVVQK+++  E  QR++I+ +I+ H+  L+KYTYGKHI+A++EK
Sbjct:  869 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1046

[Close]

BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: PUM2_HUMAN (Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.651e-51
Identity = 97/179 (54.19%), Postives = 130/179 (72.63%), Query Frame = 1

Query:    4 IVTTFFDQVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTD-ENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 537
            I+  F  QV  LSTHPYGCRVIQRILEHC   +T   +++E+      L QDQYGNYV+QHVLEHG+P ++S I+ E+ GK++ +SQ KFASNVVEKC+T     ER LL+DE+    D  +  L  MMKDQ+ANYVVQK+++  E  QR++I+ +I+ H+  L+KYTYGKHI+A++EK
Sbjct:  869 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1046

[Close]

BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: PUM1_CHICK (Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.931e-50
Identity = 94/179 (52.51%), Postives = 129/179 (72.07%), Query Frame = 1

Query:    4 IVTTFFDQVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTD-ENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 537
            I+  F  QV  LSTHPYGCRVIQRILEHC   +T   +++E+      L QDQYGNYV+QHVLEHG+P ++S I+ E+ G ++ +SQ KFASNVVEKC+T     ER +L+DE+    D  +  L  MMKDQ+ANYVVQK+++  E  QR++++ +I+ H+  L+KYTYGKHI+A++EK
Sbjct:  992 IIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1169

[Close]

BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: PUM1_PONAB (Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.999e-50
Identity = 94/179 (52.51%), Postives = 129/179 (72.07%), Query Frame = 1

Query:    4 IVTTFFDQVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTD-ENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 537
            I+  F  QV  LSTHPYGCRVIQRILEHC   +T   +++E+      L QDQYGNYV+QHVLEHG+P ++S I+ E+ G ++ +SQ KFASNVVEKC+T     ER +L+DE+    D  +  L  MMKDQ+ANYVVQK+++  E  QR++++ +I+ H+  L+KYTYGKHI+A++EK
Sbjct:  989 IIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1166

HSP 2 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 53/192 (27.60%), Postives = 101/192 (52.60%), Query Frame = 1

Query:   28 VVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIV-------ARVEKLVAAGERRIAAQSPH 582
            V++L+   YGCRVIQ+ LE    S  Q++++ E+ G V    +DQ GN+VVQ  +E  +P     II+   G++  +S   +   V+++ L    P++   +++E+   T++      +++DQ+ NYV+Q VLE    + +  I++ I+ ++  L ++ +  ++V       +R E+ V   E       PH
Sbjct:  925 VLSLALQMYGCRVIQKALEFIP-SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPH 1109

HSP 3 Score: 70.4774 bits (171), Expect = 1.204e-11
Identity = 45/183 (24.59%), Postives = 83/183 (45.36%), Query Frame = 1

Query:   73 RILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVD-----------------------EMLGSTDENEPLQAM-------MKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARV 531
            R+LE  ++++  +  + EI G +   +QDQ+G+  +Q  LE   P ER ++  E+     Q+    F + V++K   FG   ++  L +                       E + S  +NE ++ +       +KDQ  N+VVQK +E  + Q  + I+   K  + AL  + YG  ++ R+
Sbjct:  831 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 1013

[Close]

BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: PUM1_MOUSE (Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.999e-50
Identity = 94/179 (52.51%), Postives = 129/179 (72.07%), Query Frame = 1

Query:    4 IVTTFFDQVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTD-ENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 537
            I+  F  QV  LSTHPYGCRVIQRILEHC   +T   +++E+      L QDQYGNYV+QHVLEHG+P ++S I+ E+ G ++ +SQ KFASNVVEKC+T     ER +L+DE+    D  +  L  MMKDQ+ANYVVQK+++  E  QR++++ +I+ H+  L+KYTYGKHI+A++EK
Sbjct:  992 IIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1169

HSP 2 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 52/193 (26.94%), Postives = 101/193 (52.33%), Query Frame = 1

Query:   28 VVTLSTHPYGCRVIQRILEHC-KDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIV-------ARVEKLVAAGERRIAAQSPH 582
            V++L+   YGCRVIQ+ LE    D +  ++++ E+ G V    +DQ GN+VVQ  +E  +P     II+   G++  +S   +   V+++ L    P++   +++E+   T++      +++DQ+ NYV+Q VLE    + +  I++ I+ ++  L ++ +  ++V       +R E+ V   E       PH
Sbjct:  926 VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPH 1112

[Close]

BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: PUM1_HUMAN (Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3)

HSP 1 Score: 197.978 bits (502), Expect = 4.999e-50
Identity = 94/179 (52.51%), Postives = 129/179 (72.07%), Query Frame = 1

Query:    4 IVTTFFDQVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTD-ENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 537
            I+  F  QV  LSTHPYGCRVIQRILEHC   +T   +++E+      L QDQYGNYV+QHVLEHG+P ++S I+ E+ G ++ +SQ KFASNVVEKC+T     ER +L+DE+    D  +  L  MMKDQ+ANYVVQK+++  E  QR++++ +I+ H+  L+KYTYGKHI+A++EK
Sbjct:  989 IIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1166

HSP 2 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 53/192 (27.60%), Postives = 101/192 (52.60%), Query Frame = 1

Query:   28 VVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIV-------ARVEKLVAAGERRIAAQSPH 582
            V++L+   YGCRVIQ+ LE    S  Q++++ E+ G V    +DQ GN+VVQ  +E  +P     II+   G++  +S   +   V+++ L    P++   +++E+   T++      +++DQ+ NYV+Q VLE    + +  I++ I+ ++  L ++ +  ++V       +R E+ V   E       PH
Sbjct:  925 VLSLALQMYGCRVIQKALEFIP-SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQ------LVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPH 1109

HSP 3 Score: 70.4774 bits (171), Expect = 1.204e-11
Identity = 45/183 (24.59%), Postives = 83/183 (45.36%), Query Frame = 1

Query:   73 RILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVD-----------------------EMLGSTDENEPLQAM-------MKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARV 531
            R+LE  ++++  +  + EI G +   +QDQ+G+  +Q  LE   P ER ++  E+     Q+    F + V++K   FG   ++  L +                       E + S  +NE ++ +       +KDQ  N+VVQK +E  + Q  + I+   K  + AL  + YG  ++ R+
Sbjct:  831 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 1013

[Close]

BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: PUM_DROME (Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 4.232e-49
Identity = 96/178 (53.93%), Postives = 129/178 (72.47%), Query Frame = 1

Query:    4 IVTTFFDQVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 537
            I+  F  QV +LSTHPYGCRVIQRILEHC   +T + ++DE+      L QDQYGNYV+QHVLEHGK  ++SI+I  + GK++ +SQ KFASNVVEKC+T     ER  L+DE+   T  +  L  MMKDQ+ANYVVQK+++  E  Q + ++++I+ H+ AL+KYTYGKHI A++EK
Sbjct: 1252 IINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQT-TPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEV--CTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEK 1426

HSP 2 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 49/170 (28.82%), Postives = 89/170 (52.35%), Query Frame = 1

Query:   22 DQVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARV 531
            + +V  S   +G R IQ+ LE    ++ Q  V  EIL +   L  D +GNYV+Q   E G P +++ +  ++ G ++Q++ Q +   V++K L    P ++Q +V E+ G       +   +KDQ  N+VVQK +E  +    + I++  K  + +L  + YG  ++ R+
Sbjct: 1114 NHIVEFSQDQHGSRFIQQKLERATAAEKQM-VFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGH------VLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRI 1276

HSP 3 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 47/177 (26.55%), Postives = 92/177 (51.98%), Query Frame = 1

Query:   28 VVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGER 558
            V+ L+   YGCRVIQ+ LE     + Q +++ E+ G V    +DQ GN+VVQ  +E   P     II    G++  +S   +   V+++ L      +   ++DE+      +E  + +++DQ+ NYV+Q VLE  + + + ++++ ++  +  L ++ +  ++V +       GER
Sbjct: 1188 VLQLALQMYGCRVIQKALESISPEQ-QQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDEL------HEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGER 1357

[Close]

BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: PUF3_SCHPO (mRNA-binding protein puf3 OS=Schizosaccharomyces pombe GN=puf3 PE=2 SV=4)

HSP 1 Score: 157.532 bits (397), Expect = 7.488e-38
Identity = 73/172 (42.44%), Postives = 118/172 (68.60%), Query Frame = 1

Query:   25 QVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDEN-EPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 537
            Q+  LS HPYGCRVIQR +EHC   +    +++E+L  +  L QDQYGNYVVQH+L  G   ++  I + +   ++ +S  KFASNVVE+C+++    +R+ ++++++    EN   L  MMKD++ANYV+QK+L+   +++R+L++S I  H++ LKK+TYGKH++  VE+
Sbjct:  545 QIHVLSAHPYGCRVIQRAIEHCHSER--KLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYIYPHISVLKKFTYGKHLIMSVER 714

HSP 2 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 44/167 (26.35%), Postives = 81/167 (48.50%), Query Frame = 1

Query:   28 VVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVAR 528
            VV  ST  +G R IQ+ L    + + ++   +    S   L  D +GNYVVQ   E G   ++ I++ ++ G +  +S Q +   VV+K + +  P  +  L+ E+ G   +       + DQ  N+V+QK +E  +    + IL  ++  ++ L  + YG  ++ R
Sbjct:  401 VVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLD------CVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQR 561

HSP 3 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 48/178 (26.97%), Postives = 90/178 (50.56%), Query Frame = 1

Query:   28 VVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERR 561
            V +LS   YGCRV+Q+ +E+      Q +++ E+ G V     DQ GN+V+Q  +E         I+  L  +I  +S   +   V+++ +     +ER+L+++E+L        +  + +DQ+ NYVVQ +L T  +  ++ I   +  HL  L  + +  ++V R    ++  +RR
Sbjct:  474 VFSLSLQMYGCRVVQKAIEYISPEH-QVQLIQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCH-SERKLIIEELLPH------ILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYISDVDRR 643

[Close]

BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: PUF3_YEAST (mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae GN=PUF3 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.333e-31
Identity = 76/198 (38.38%), Postives = 123/198 (62.12%), Query Frame = 1

Query:    4 IVTTFFDQVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSI------IIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLG-------STDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNAL-KKYTYGKHIVARVEKLVAAGE 555
            I+++    +  LSTH YGCRVIQR+LE    S+ Q  +++E+   +  L QDQYGNYV+Q+VL+  +   + +      IIE +A  +V+ S+ KFASNVVEK + +G  N++ L++ ++L        + +++ P+  M+KDQFANYV+QK++   E + ++LI+  I+ +L+ L K  + G   +A VEKL A  E
Sbjct:  679 ILSSLTGHIYHLSTHSYGCRVIQRLLEF-GSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAIRAYLDKLNKSNSLGNRHLASVEKLAALVE 875

HSP 2 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 49/160 (30.63%), Postives = 88/160 (55.00%), Query Frame = 1

Query:   52 YGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARV 531
            +G R IQR L     S+ +  + +EI      L+ D +GNYV+Q   E G   +++ ++++  G + Q+S Q +A  V++K L +   N+R  LV E+      ++ +  M+KDQ  N+V+QK +ET   ++   ILS +  H+  L  ++YG  ++ R+
Sbjct:  551 HGSRFIQRELATSPASEKEV-IFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLEL------SDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRL 703

HSP 3 Score: 80.4925 bits (197), Expect = 1.163e-14
Identity = 51/188 (27.13%), Postives = 98/188 (52.13%), Query Frame = 1

Query:    4 IVTTFFDQVVTLSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSR---IKVHLNALKKYTYGKHIVARVEKLVAAGER 558
            +V  F   +  LS   Y CRVIQ+ LE+  DS  + +++ E+  SV  + +DQ GN+V+Q  +E     +   I+  L G I  +S   +   V+++ L FG   +++ +++E+       + +  +++DQ+ NYV+Q VL+  +   +E++  +   I+   N + +Y+  K     VEK +  G +
Sbjct:  607 LVDQFKGNMKQLSLQMYACRVIQKALEYI-DSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNEL------KDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSK 787

[Close]

BLAST of CK938654 vs. ExPASy Swiss-Prot
Match: YDHE_SCHPO (Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces pombe GN=SPAC6G9.14 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.050e-23
Identity = 56/167 (33.53%), Postives = 101/167 (60.48%), Query Frame = 1

Query:   37 LSTHPYGCRVIQRILEHCKDSKTQSKVMDEILGSVSMLAQDQYGNYVVQHVLEHGKPHERSIIIEELAGKIVQMSQQKFASNVVEKCLTFGGPNERQLLVDEMLGSTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELILSRIKVHLNALKKYTYGKHIVARVEK 537
            +STH +GC V+QR  +H   ++ + ++++ I+     L QD +GNYV+Q+VLE   P+    II     K+  +S QKF+SNV+EKC+ F     ++ L+ E++    + + L  +++D FANYV+Q  L+    +QR  ++ RIK  + ++K    G+ I++++E+
Sbjct:  496 VSTHRHGCCVVQRCFDHASPAQIE-QLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFAPAAIKEKLISELM----DEKHLPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPSIKNTPCGRRILSKLER 657

The following BLAST results are available for this feature:

BLAST of CK938654 vs. ExPASy Swiss-Prot

BLAST of CK938654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14


Match Name	E-value	Identity	Description
PUM2_MOUSE	2.651e-51	54.19	Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=...	[more]
PUM2_HUMAN	2.651e-51	54.19	Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=...	[more]
PUM1_CHICK	2.931e-50	52.51	Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV...	[more]
PUM1_PONAB	4.999e-50	52.51	Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=...	[more]
PUM1_MOUSE	4.999e-50	52.51	Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=...	[more]
PUM1_HUMAN	4.999e-50	52.51	Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=...	[more]
PUM_DROME	4.232e-49	53.93	Maternal protein pumilio OS=Drosophila melanogaste...	[more]
PUF3_SCHPO	7.488e-38	42.44	mRNA-binding protein puf3 OS=Schizosaccharomyces p...	[more]
PUF3_YEAST	2.333e-31	38.38	mRNA-binding protein PUF3 OS=Saccharomyces cerevis...	[more]
YDHE_SCHPO	1.050e-23	33.53	Pumilio domain-containing protein C6G9.14 OS=Schiz...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004439_H06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK938654 ID=CK938654; Name=CK938654; organism=Citrus sinensis; type=EST; length=783bp
GGGATTGTCACAACATTCTTCGACCAAGTCGTTACCCTTTCCACCCATCC
TTATGGGTGTCGTGTGATACAGAGAATACTTGAGCACTGCAAGGACTCCA
AAACGCAGAGTAAGGTTATGGATGAAATTTTAGGATCTGTTAGCATGTTG
GCACAGGATCAGTATGGCAATTACGTGGTCCAGCATGTTCTGGAGCATGG
AAAGCCTCATGAACGTTCTATTATAATTGAGGAATTAGCTGGAAAGATAG
TGCAAATGAGTCAGCAGAAGTTTGCCTCCAATGTTGTGGAGAAGTGTTTA
ACTTTTGGAGGCCCTAATGAACGTCAGTTACTGGTGGACGAGATGCTTGG
CTCTACAGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAGTTTG
CAAACTACGTTGTACAAAAAGTTTTGGAGACTTGTGAGGACCAACAACGC
GAGCTGATTCTTTCACGAATTAAAGTTCATTTGAATGCATTAAAGAAGTA
CACGTATGGGAAGCATATTGTTGCGCGTGTAGAGAAACTTGTTGCTGCTG
GGGAACGCAGAATTGCTGCTCAGTCTCCACACCCTGCTTAGGCGGCATAG
GAAAGAAAGTTGTCTGTACAGCTAACTGAGGCTAGTGTGAGCTTCCTCTT
TTTCTCTTTTCTTTCTCCTGGTATTTAGAGCAATGACTCTACCTATCTCT
TCTAAGATGGGTACGAGGGGATCAAAAATAAAGTTGTTGGTTGTACTTGG
AAAGTGTACATTCTGTAGTTTACGGTTTATACG