CK938644

Overview
NameCK938644
Unique NameCK938644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938644_ssr13 microsatellite CK938644_ssr13:13..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.786e-57
Identity = 115/123 (93.50%), Postives = 119/123 (96.75%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 430
            MAR+KVHELR K+K +LLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK ALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ SLKTEREKK+EMYFPMRKYAIKV
Sbjct:    1 MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYAIKV 123          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.367e-56
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 430
            MAR+KVHELR KSKTDL NQLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIKV 123          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.671e-55
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 430
            MAR+KVHELR KSK+DL NQLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.351e-55
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 430
            MAR+KVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:    1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.170e-54
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 430
            MAR+KVHELR KSK+DL  QLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK++MYFP+RKYAIKV
Sbjct:    1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIKV 123          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_RAT (60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.856e-38
Identity = 79/122 (64.75%), Postives = 101/122 (82.79%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA++K  +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_MOUSE (60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.856e-38
Identity = 79/122 (64.75%), Postives = 101/122 (82.79%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA++K  +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_BOVIN (60S ribosomal protein L35 OS=Bos taurus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.166e-38
Identity = 78/122 (63.93%), Postives = 102/122 (83.61%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA++K  +LR K K +LL QL+DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_HUMAN (60S ribosomal protein L35 OS=Homo sapiens GN=RPL35 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.401e-38
Identity = 78/122 (63.93%), Postives = 101/122 (82.79%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA++K  +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
BLAST of CK938644 vs. ExPASy Swiss-Prot
Match: RL35_CHICK (60S ribosomal protein L35 OS=Gallus gallus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 5.401e-38
Identity = 79/122 (64.75%), Postives = 101/122 (82.79%), Query Frame = 2
Query:   62 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 427
            MA++K  +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYAIK
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRKYAIK 122          
The following BLAST results are available for this feature:
BLAST of CK938644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_EUPES1.786e-5793.5060S ribosomal protein L35 OS=Euphorbia esula GN=RP... [more]
RL354_ARATH3.367e-5691.8760S ribosomal protein L35-4 OS=Arabidopsis thalian... [more]
RL351_ARATH1.671e-5591.0660S ribosomal protein L35-1 OS=Arabidopsis thalian... [more]
RL352_ARATH6.351e-5590.2460S ribosomal protein L35-2 OS=Arabidopsis thalian... [more]
RL353_ARATH9.170e-5488.6260S ribosomal protein L35-3 OS=Arabidopsis thalian... [more]
RL35_RAT1.856e-3864.7560S ribosomal protein L35 OS=Rattus norvegicus GN=... [more]
RL35_MOUSE1.856e-3864.7560S ribosomal protein L35 OS=Mus musculus GN=Rpl35... [more]
RL35_BOVIN3.166e-3863.9360S ribosomal protein L35 OS=Bos taurus GN=RPL35 P... [more]
RL35_HUMAN5.401e-3863.9360S ribosomal protein L35 OS=Homo sapiens GN=RPL35... [more]
RL35_CHICK5.401e-3864.7560S ribosomal protein L35 OS=Gallus gallus GN=RPL3... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_A05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938644 ID=CK938644; Name=CK938644; organism=Citrus sinensis; type=EST; length=651bp
GGGGGACATAAGTCTTCTTCTTCTTCGCACACTGACAGAAAGAGTCGAAT
AACCAGCAGCCATGGCAAGAGTCAAGGTTCATGAACTGCGGACCAAATCC
AAGACGGATTTATTGAACCAGTTGAAAGATCTGAAAGCGGAGCTCGCTCT
TCTGCGGGTCGCCAAAGTCACCGGTGGCGCGCCCAATAAGCTTTCCAAAA
TTAAAGTGGTGAGGCTGTCGATTGCCCAAGTGTTGACTGTGATATCGCAG
AAGCAGAAGGCGGCTTTGAGAGAAGCATATAAGAACAAGAAGTTTTTGCC
ACTTGATCTTCGTCCCAAGAAGACCAGAGCTATCCGAAGGCGCCTCACCA
AGCATCAGGCATCTTTGAAGACTGAACGTGAGAAGAAGAGGGAAATGTAC
TTTCCAATGAGGAAATACGCCATTAAGGTGTAAGATCAAATTGAATTGGG
AAGGAGACAATGATGTTAAACTTGTCAAATGCTATCAAAGATTTTTTTGT
TCTGTTGAATTTTAAGTTTAGTTTTTCTTATCTTCCATTTGTGTTACTAG
TATGGATTTTGGATTTCGATGAGAGTATTCAGGTTTTAATTCTATATACT
TGAAGGTTTGGTCTCATTTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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