CK938642

Overview
NameCK938642
Unique NameCK938642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938642_ssr93 microsatellite CK938642_ssr93:93..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11921 contig Csv1_Contig11921:1..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938642 vs. ExPASy Swiss-Prot
Match: APX2_ARATH (L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3)

HSP 1 Score: 376.326 bits (965), Expect = 1.040e-103
Identity = 177/222 (79.73%), Postives = 193/222 (86.94%), Query Frame = 2
Query:  125 KCYPKVGDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKDIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYA 790
            K YP+V +EY+KAV++CKRKLRGLIAEKHCAPI+LRLAWHSAGT+DV TKTGGPFGTIRHP ELAH+ANNGLDIAVRLL+PIK+ FPILSYADFYQLAGVVAVE+TGGPEIPFHPGR DK +PPPEGRLP ATKG DHLRDVFG MGL+DKDIV LSGGHTLGRCHKERSGFEG WT NPLIFDNSYF              P+DKALL+DP+F P VEKYA
Sbjct:    4 KSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRLLDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYA 225          
BLAST of CK938642 vs. ExPASy Swiss-Prot
Match: APX1_PEA (L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2)

HSP 1 Score: 364.77 bits (935), Expect = 3.130e-100
Identity = 176/225 (78.22%), Postives = 190/225 (84.44%), Query Frame = 2
Query:  119 MGKCYPKVGDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGH-MGLSDKDIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYA 790
            MGK YP V  +YQKA+EK KRKLRG IAEK CAP+ILRLAWHSAGT+D  TKTGGPFGTI+H  ELAH ANNGLDIAVRLLEPIK+QFPI+SYADFYQLAGVVAVE+TGGPE+PFHPGR DK +PPPEGRLP+ATKGSDHLRDVFG  MGLSD+DIV LSGGHT+G  HKERSGFEGPWT+NPLIFDNSYF              PSDKALL D VFRPLVEKYA
Sbjct:    1 MGKSYPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSAGTFDSKTKTGGPFGTIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYA 225          
BLAST of CK938642 vs. ExPASy Swiss-Prot
Match: APX2_ORYSJ (L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.777e-95
Identity = 168/223 (75.34%), Postives = 186/223 (83.41%), Query Frame = 2
Query:  125 KCYPKVGDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVF-GHMGLSDKDIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYA 790
            K YP V DEY  AV K KRKLRGLIAEK+CAP++LRLAWHSAGT+DV+++TGGPFGT+++P E +H AN GLDIAVRLL+PIK Q PILSYADFYQLAGVVAVEVTGGPE+PFHPGR DK +PPPEGRLP+AT+GSDHLR VF   MGLSDKDIV LSGGHTLGRCHKERSGFEG WT+NPLIFDNSYF              PSDKAL+ DP FRPLVEKYA
Sbjct:    4 KSYPTVSDEYLAAVGKAKRKLRGLIAEKNCAPLMLRLAWHSAGTFDVSSRTGGPFGTMKNPGEQSHAANAGLDIAVRLLDPIKDQLPILSYADFYQLAGVVAVEVTGGPEVPFHPGRQDKPEPPPEGRLPDATQGSDHLRQVFSAQMGLSDKDIVALSGGHTLGRCHKERSGFEGAWTSNPLIFDNSYFTELVSGEKEGLLQLPSDKALMADPAFRPLVEKYA 226          
BLAST of CK938642 vs. ExPASy Swiss-Prot
Match: APX1_ORYSJ (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. japonica GN=APX1 PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 4.378e-94
Identity = 166/225 (73.78%), Postives = 185/225 (82.22%), Query Frame = 2
Query:  119 MGKCYPKVGDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFG-HMGLSDKDIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYA 790
            M K YP V  EYQ+AVEK ++KLR LIAEK CAP++LRLAWHSAGT+DV++KTGGPFGT++ P EL+H AN GLDIAVR+LEPIK++ P +SYADFYQLAGVVAVEV+GGP +PFHPGR DK  PPPEGRLP+ATKGSDHLR VFG  MGLSD+DIV LSGGHTLGRCHKERSGFEGPWT NPL FDNSYF              PSDKALL DP FRPLVEKYA
Sbjct:    1 MAKNYPVVSAEYQEAVEKARQKLRALIAEKSCAPLMLRLAWHSAGTFDVSSKTGGPFGTMKTPAELSHAANAGLDIAVRMLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPEGRLPDATKGSDHLRQVFGAQMGLSDQDIVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDPAFRPLVEKYA 225          
BLAST of CK938642 vs. ExPASy Swiss-Prot
Match: APX1_ORYSI (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. indica GN=APX1 PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.706e-93
Identity = 165/225 (73.33%), Postives = 184/225 (81.78%), Query Frame = 2
Query:  119 MGKCYPKVGDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFG-HMGLSDKDIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYA 790
            M K YP V  EYQ+AVEK ++KLR LIAEK CAP++LRLAWHSAGT+DV++KTGGPFGT++ P EL+H AN GLDIAVR+LEPIK++ P +SYADFYQLAGVVAVEV+GGP +PFHPGR DK  PPPEGRLP+ATKGSDHLR VFG  MGLSD+DIV LSGGHTLGRCHKERSGFEGPWT NPL FDNSYF              PSDKALL DP F PLVEKYA
Sbjct:    1 MAKNYPVVSAEYQEAVEKARQKLRALIAEKSCAPLMLRLAWHSAGTFDVSSKTGGPFGTMKTPAELSHAANAGLDIAVRMLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPEGRLPDATKGSDHLRQVFGAQMGLSDQDIVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDPAFCPLVEKYA 225          
BLAST of CK938642 vs. ExPASy Swiss-Prot
Match: APX1_ARATH (L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1 PE=1 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 1.408e-92
Identity = 162/225 (72.00%), Postives = 187/225 (83.11%), Query Frame = 2
Query:  119 MGKCYPKVGDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFG-HMGLSDKDIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYA 790
            M K YP V ++Y+KAVEKC+RKLRGLIAEK+CAPI++RLAWHSAGT+D  ++TGGPFGT+R   E AH AN+G+ IA+RLL+PI++QFP +S+ADF+QLAGVVAVEVTGGP+IPFHPGR DK  PPPEGRLP+ATKG DHLRDVF   MGLSDKDIV LSG HTLGRCHK+RSGFEG WT+NPLIFDNSYF               SDKALL+DPVFRPLVEKYA
Sbjct:    1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYA 225          
BLAST of CK938642 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 8.584e-74
Identity = 138/219 (63.01%), Postives = 158/219 (72.15%), Query Frame = 2
Query:  134 PKVGDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKDIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYA 790
            P V  EY   VE+ +R LR LIA K CAPI+LRLAWH AGTYD  TKTGGP G+IR P E +H AN G+ IA+ LLEP+KQ+ P ++YAD YQLAGVVAVEVTGGP I + PGR D SD P EGRLP+A KG+ HLR+VF  MGLSDKDIV LSGGHTLG+   ERSGF+G WT +PL FDNSYF              P+DKAL+EDP FR  VE YA
Sbjct:    5 PVVDAEYMAEVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEEGRLPDAKKGAAHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALVEDPTFRRYVELYA 223          
BLAST of CK938642 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 8.584e-74
Identity = 138/219 (63.01%), Postives = 158/219 (72.15%), Query Frame = 2
Query:  134 PKVGDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKDIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYA 790
            P V  EY   VE+ +R LR LIA K CAPI+LRLAWH AGTYD  TKTGGP G+IR P E +H AN G+ IA+ LLEP+KQ+ P ++YAD YQLAGVVAVEVTGGP I + PGR D SD P EGRLP+A KG+ HLR+VF  MGLSDKDIV LSGGHTLG+   ERSGF+G WT +PL FDNSYF              P+DKAL+EDP FR  VE YA
Sbjct:    5 PVVDAEYMAEVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQRHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEEGRLPDAKKGAAHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALVEDPTFRRYVELYA 223          
BLAST of CK938642 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 7.267e-73
Identity = 138/219 (63.01%), Postives = 158/219 (72.15%), Query Frame = 2
Query:  134 PKVGDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKDIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYA 790
            P V  EY + V++ +R LR LI+ K CAPI+LRLAWH AGTYDVNTKTGG  G+IR+ +E  H +N GL IA+ LLEPIK + P ++YAD YQLAGVVAVEVTGGP + F PGR D S  P EGRLP+A KG+ HLRD+F  MGLSDKDIV LSGGHTLGR H ERSGFEG WT  PL FDNSYF              P+DKALLEDP FR  V+ YA
Sbjct:    4 PVVDAEYLRQVDRARRHLRALISSKGCAPIMLRLAWHDAGTYDVNTKTGGANGSIRYEEEYTHGSNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSSVCPREGRLPDAKKGALHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFEGAWTQEPLKFDNSYFLELLKGESEGLLKLPTDKALLEDPSFRRYVDLYA 222          
BLAST of CK938642 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 9.491e-73
Identity = 137/219 (62.56%), Postives = 158/219 (72.15%), Query Frame = 2
Query:  134 PKVGDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEANNGLDIAVRLLEPIKQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKDIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXXPSDKALLEDPVFRPLVEKYA 790
            P V  EY K + K +R+LR LIA K+CAPI+LRLAWH AGTYD  +KTGGP G+IR+ +E  H AN+GL IA+ L E +K + P ++YAD YQLAGVVAVEVTGGP+I F PGR D +  P EGRLP+A +G  HLRDVF  MGLSDKDIV LSGGHTLGR H ERSGF+GPWT  PL FDNSYF              P+DK LLEDP FR LVE YA
Sbjct:    4 PIVDAEYLKEITKARRELRSLIANKNCAPIMLRLAWHDAGTYDAQSKTGGPNGSIRNEEEHTHGANSGLKIALDLCEGVKAKHPKITYADLYQLAGVVAVEVTGGPDIVFVPGRKDSNVCPKEGRLPDAKQGFQHLRDVFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTQEPLKFDNSYFVELLKGESEGLLKLPTDKTLLEDPEFRRLVELYA 222          
The following BLAST results are available for this feature:
BLAST of CK938642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
APX2_ARATH1.040e-10379.73L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis... [more]
APX1_PEA3.130e-10078.22L-ascorbate peroxidase, cytosolic OS=Pisum sativum... [more]
APX2_ORYSJ1.777e-9575.34L-ascorbate peroxidase 2, cytosolic OS=Oryza sativ... [more]
APX1_ORYSJ4.378e-9473.78L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_ORYSI3.706e-9373.33L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_ARATH1.408e-9272.00L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis... [more]
APX3_ORYSJ8.584e-7463.01Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI8.584e-7463.01Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX4_ORYSJ7.267e-7363.01Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ARATH9.491e-7362.56L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_C01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938642 ID=CK938642; Name=CK938642; organism=Citrus sinensis; type=EST; length=790bp
GGGAGAAACACCCGCTNNNNNATCTTCAGCTCGTCACAGTTCAGTTCGGT
CATCGCATTCGACAGTAACTACTTAACAAGCCTCAAGCTGAGCTTCTTCT
TCTTCTTCTTTTTTCATCATGGGAAAGTGTTATCCAAAAGTGGGCGATGA
GTATCAGAAAGCAGTGGAGAAATGCAAGAGGAAACTCAGAGGACTCATTG
CTGAGAAACACTGTGCCCCTATCATTCTTCGCTTGGCATGGCACTCAGCG
GGGACTTATGACGTGAACACGAAGACAGGAGGGCCTTTTGGGACGATCAG
GCACCCAGATGAGCTTGCTCATGAGGCTAACAATGGTCTTGATATTGCTG
TCAGGCTCTTGGAGCCCATCAAGCAGCAGTTTCCTATCTTGTCCTACGCT
GATTTCTATCAGTTGGCTGGAGTTGTTGCCGTTGAAGTTACCGGAGGGCC
TGAAATACCTTTCCACCCTGGAAGACCGGACAAATCTGATCCGCCCCCAG
AAGGTCGCTTGCCAAATGCCACCAAAGGTTCTGACCATTTGAGAGATGTC
TTCGGCCACATGGGTCTGAGTGATAAGGATATTGTTGTTTTATCCGGCGG
TCATACATTGGGTAGGTGCCACAAGGAGCGTTCTGGATTTGAAGGACCCT
GGACTAACAATCCACTTATTTTTGACAATTCATATTTTAAGGAATTGCTG
AGTGGAGAGAAAGAAGGTCTACTTCAGCTGCCATCAGACAAGGCTCTTCT
CGAGGACCCAGTGTTTCGTCCTCTTGTTGAAAAATATGCT
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