CN187791

Overview
NameCN187791
Unique NameCN187791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187791 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.287e-46
Identity = 106/181 (58.56%), Postives = 124/181 (68.51%), Query Frame = -3
Query:  232 PNNDVAEEKAVAQ------LHDQEKPVDDSKALAVVD-QTPDXXXXXXXXXXXXXXSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 753
            P   VA+EKA+          ++EKP DDSKAL VV+ + P+                DRD  LA V  EKR S IKAWEESEK+KAENKAQKK+SA+ AWEN             EEQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+EA+RGED+LKAEE+AAKYRATGT PKK+LG F
Sbjct:   25 PKEVVADEKAIVAPALPPPAEEKEKP-DDSKALVVVETKAPEPADEKKEGSI------DRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198          
BLAST of CN187791 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.054e-44
Identity = 100/171 (58.48%), Postives = 118/171 (69.01%), Query Frame = -3
Query:  232 DVAEEKAVAQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 744
            DVAEEK   Q    E+  DDSKAL VV++  +                DRDV LA++ KEKR SF++AWEESEK+KAENKA+KK++ V AWEN             EEQLE+KKAEYAE+MKNKVA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   GCF
Sbjct:   48 DVAEEKI--QNPPPEQIFDDSKALTVVEKPVEEPAPAKPASASL----DRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212          
BLAST of CN187791 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.626e-41
Identity = 95/171 (55.56%), Postives = 118/171 (69.01%), Query Frame = -3
Query:  232 DVAEEKAVAQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 744
            +VA+EK    +H+   P  +SKALAVV++  +                DRDV LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+S V AWEN             EE+LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE++LKAEE+ AKYRATG  PK   GCF
Sbjct:   30 EVADEK----IHNP--PPVESKALAVVEKPIEEHTPKKASSGSA----DRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190          
The following BLAST results are available for this feature:
BLAST of CN187791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU1.287e-4658.56Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH2.054e-4458.48Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH3.626e-4155.56Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005A05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187791 ID=CN187791; Name=CN187791; organism=Citrus sinensis; type=EST; length=836bp
TTTTTTTTTTTTTTTTTGGATTAAGAAAGTCATATTTATTGTTTCAAACA
AATAAAAAGACAGATAGTACTTCTATTCCACAACACTTCGATCTTATCAT
TTGCTTTAGTTCCATTGAGATTTACACACAAAACAGCACACCAATGACAC
AAGAAAGTATACAGATATAAAGTTGGGAGTCATAATCATAAACACAAAAA
ATATACCACTTGCAAAAACAATTTGATTTCAGAAGCAACCGAGGAGCTTC
TTTGGAGTGGTCCCAGTAGCCCGATATTTTGCAGCTATCTCCTCAGCCTT
AAGAACGTCTTCTCCCCGTCTAGCTTCAACCATTGCCCTTTTCTCTTCTG
CTTCCTTGTGAACTAGAGCTACCTTATTTTTCATTTTTTCAGCATACTCT
GCCTTCTTCCTCTCCAGTTGTTCCTCAATCTTTTTCAGTTTGGCTTCTAG
AGATGCTTTCTTGCTATTTTCCCATGCAGCAACAGCTGAGAGCTTTTTCT
GAGCCTTATTCTCTGCTTTTGTTTTTTCACTCTCTTCCCATGCCTTGATA
AAAGACTCTCTCTTTTCCTTTTCGACCTCTGCAAGAGCAACATCTCTATC
ATGCGATCCAGAAATTTTCTTTTCCCCTGAAATTTTCTTTTTGGCCGAAT
CTGGAGTTTGATCAACTACTGCGAGAGCTTTGGAGTCATCAACAGGCTTC
TCTTGATCATGTAATTGAGCAACAGCTTTCTCCTCCGCGACGTCGTTGTT
GGGGACAGCCGGAGCCGGAGCTGGAGCAAAGAGCTGGAGCTGGAGCTGGG
GCCGCTGGCGTCTCAGCTTCTAACTTTTCTTCACTT
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