CK938613

Overview
NameCK938613
Unique NameCK938613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK938613 vs. ExPASy Swiss-Prot
Match: YMF16_ARATH (Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.163e-50
Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    5 VGATSTNLLXIKLQPKIYDYIMLTVRILFISSVCSQVPVIVICLLELRGLSVETFTNNRRFLMVF 199
            VGATSTN L IKLQPKIYDYIMLTVRI FISSVCSQVPVIVICLLE RGLS+ETFTNNRRFLMVF
Sbjct:  144 VGATSTNSLMIKLQPKIYDYIMLTVRISFISSVCSQVPVIVICLLEPRGLSLETFTNNRRFLMVF 208

HSP 2 Score: 103.99 bits (258), Expect = 2.163e-50
Identity = 52/56 (92.86%), Postives = 52/56 (92.86%), Query Frame = 3 
Query:  198 FSLFTAALSTPPDIWCQIVACFLIYLIIELAIFVALIVQVLEEGWTSGMRESGSIE 365
            FSL TAAL TPPDIWCQIVACFLI LIIELAIFVALIVQV EEGWTSGMRESGSIE
Sbjct:  208 FSLLTAALFTPPDIWCQIVACFLISLIIELAIFVALIVQVREEGWTSGMRESGSIE 263
[Close]
BLAST of CK938613 vs. ExPASy Swiss-Prot
Match: YMF16_MARPO (Uncharacterized tatC-like protein ymf16 OS=Marchantia polymorpha GN=YMF16 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.905e-24
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 2 
Query:    2 RVGATSTNLLXIKLQPKIYDYIMLTVRILFISSVCSQVPVIVICLLELRGLSVETFTNNRRFLMVFFAFHSCSFHT 229
            ++  TSTNLL IKLQPKI+DYIMLTVRILFISS+CSQVPV+VICLLE +G  V+TF  NRRF   FFAFHS  F+T
Sbjct:  135 KLSTTSTNLLIIKLQPKIFDYIMLTVRILFISSICSQVPVLVICLLESKG--VKTFIKNRRFFYSFFAFHSSFFYT 208
The following BLAST results are available for this feature:
BLAST of CK938613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YMF16_ARATH2.163e-5092.31Uncharacterized tatC-like protein ymf16 OS=Arabido... [more]
YMF16_MARPO5.905e-2472.37Uncharacterized tatC-like protein ymf16 OS=Marchan... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004440_F01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938613 ID=CK938613; Name=CK938613; organism=Citrus sinensis; type=EST; length=389bp
GCGGGTGGGTGCAACATCAACAAATTTGCTCANNATCAAGTTACAACCTA
AGATCTATGACTATATTATGTTAACTGTTCGTATTTTGTTCATTTCATCG
GTATGCTCTCAGGTACCTGTAATTGTGATCTGTTTGCTAGAACTAAGGGG
TCTTTCCGTGGAAACCTTTACAAACAATCGTCGTTTTTTGATGGTTTTTT
TCGCTTTTCACAGCTGCTCTTTCCACACCTCCGGATATCTGGTGCCAAAT
TGTCGCCTGTTTTCTTATTTATTTGATAATAGAGTTGGCTATCTTTGTGG
CATTAATTGTACAAGTTCTTGAAGAAGGCTGGACGAGTGGAATGAGGGAG
AGCGGCTCGATCGAAAAAAAAAAAAAAAAAAAAAAAAAA
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