EY665950

Overview
NameEY665950
Unique NameEY665950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665950_ssr589 microsatellite EY665950_ssr589:589..598. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665950 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 1
Query:   25 KGKGVYQFVDKYGATVDGYSPIYNENDWPPSGDVYTGGATGLAIWAVT 168
            KGKGVYQFVDKYGA VDGYSPIYN +DW PSGDVY GG TGLAIWAVT
Sbjct:   69 KGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVT 116          
BLAST of EY665950 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 1
Query:   25 KGKGVYQFVDKYGATVDGYSPIYNENDWPPSGDVYTGGATGLAIWAVT 168
            KGKGVYQ+VDKYGA VDGYSPIYN ++W PSGDVY GG TGLAIWAVT
Sbjct:   71 KGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118          
BLAST of EY665950 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 1
Query:   25 KGKGVYQFVDKYGATVDGYSPIYNENDWPPSGDVYTGGATGLAIWAVT 168
            KGKGVYQ+VDKYGA VDGYSPIYN ++W PSGDVY GG TGLAIWAVT
Sbjct:   71 KGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118          
BLAST of EY665950 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1
Query:   28 GKGVYQFVDKYGATVDGYSPIYNENDWPPSGDVYTGGATGLAIWAVT 168
            GKGVYQFVDKYGA VDGYSPIYNE +W P+GDVY GG TGL IWAVT
Sbjct:   74 GKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120          
BLAST of EY665950 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1
Query:   25 KGKGVYQFVDKYGATVDGYSPIYNENDWPPSGDVYTGGATGLAIWAVT 168
            KG GVY++VDKYGA VDGYSPIYNEN+W  SGDVY GG TGLAIWAVT
Sbjct:   73 KGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120          
BLAST of EY665950 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1
Query:   25 KGKGVYQFVDKYGATVDGYSPIYNENDWPPSGDVYTGGATGLAIWAVT 168
            KG GVY+FVDKYGA VDGYSPIYNE++W  SGDVY GG TGLAIWAVT
Sbjct:   74 KGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVT 121          
BLAST of EY665950 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   13 AGRL-KGKGVYQFVDKYGATVDGYSPIYNENDWPPSGDVYTGGATGLAIWAVT 168
            +GR+ KGKGVYQF DKYGA VDGYSPIY   +W PSGDVY GG TGL +WAVT
Sbjct:   66 SGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118          
The following BLAST results are available for this feature:
BLAST of EY665950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_TOBAC2.920e-1987.50Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU1.893e-1883.33Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC1.893e-1883.33Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL7.193e-1882.98Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_ARATH2.093e-1781.25Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM3.570e-1781.25Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU1.357e-1673.58Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-007-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665950 ID=EY665950; Name=EY665950; organism=Citrus sinensis; type=EST; length=703bp
GGATGCCTCCCGGCTGGAAGGCTCAAGGGGAAAGGTGTTTACCAATTTGT
TGACAAGTACGGTGCCACTGTTGATGGATACAGTCCTATCTACAATGAAA
ACGACTGGCCTCCCAGTGGTGATGTCTATACTGGTGGTGCAACTGGCTTG
GCAATCTGGGCTGTTACTCTTGCCGGTCTTCTTGCAGGAGGAGCACTTCT
CGCCTACCAACACCAAGTGCTTTGGCCAGTACATGAATTTCCATCAATGT
TACATTATTATCTCTATTTTGTATAACTTGTCAATGTTGCTGTTAACTGT
ACCCTTCCACATCAACTTCCTGTATCTATTTTTAGTGTACGCCTTGCGCG
GACTTCAATTGCCACCTATACCCATCAATAATTTGATACTCCCTTCTGTG
CCCTCTCTTGACAATGGTTGCCCTGGCTTTTTACCAAAAACACACCACGA
TATAATAACATACGCAACAAGCGTTGGCCGCGCCCTCTCAAAGACCCAAG
TCACCCCCCCCCCCGTGCCACGCCTCGCTCACCTAAACGAACCGATAATT
CGTTACTTATCCCCCTTTTTCCTCCTTCTCCTTGGGAACTCTCTCTCTCC
CATCCCTTCACCTACCACAACCCCCTCTTTCCCACCCCCTAAAACCCCCG
CACCCCCCCCATTCCCTTATCAACACCCCCCTCCTCCTCAGTCCGCCACC
TCC
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