CK938581

Overview
NameCK938581
Unique NameCK938581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13727 contig Csv1_Contig13727:147..444. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.402e-27
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 234
            GK SKR  F+R +I+E+AG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GGG  EKKK
Sbjct:   34 GKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.185e-26
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGG--EKKK 234
            GK SKR  F+R +I+E+AG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ G G  EKKK
Sbjct:   30 GKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.727e-26
Identity = 61/79 (77.22%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGG---GEKK 231
            GK SKR  F+R +IRE+AG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+ LRK R+ GG    EKK
Sbjct:   34 GKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.610e-21
Identity = 49/74 (66.22%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSRAPGGGE 225
            G  S+RV  +R V+RE+AG+APYE+R+ ELLKVGKDKRALK+ KRKLGTH R KKKREEM+  LRK +A   GE
Sbjct:   28 GFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_ICTPU (60S ribosomal protein L36 OS=Ictalurus punctatus GN=rpl36 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.322e-18
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 GGKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSN---ALRKSRA 210
            GG+ +K   F+R +IRE+ GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN   A+RK+ A
Sbjct:   30 GGRLTKHSKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNILAAMRKAAA 102          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_XENTR (60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.854e-17
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            G+ +K   F+R +IRE+ GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:   31 GRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_XENLA (60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.854e-17
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            G+ +K   F+R +IRE+ GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:   31 GRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_PONAB (60S ribosomal protein L36 OS=Pongo abelii GN=RPL36 PE=3 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            G+ +K   F+R +IRE+ GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:   31 GRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_LAPHA (60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            G+ +K   F+R +IRE+ GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:   31 GRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
BLAST of CK938581 vs. ExPASy Swiss-Prot
Match: RL36_HUMAN (60S ribosomal protein L36 OS=Homo sapiens GN=RPL36 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    4 GKASKRVHFMRTVIREIAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNALRKSR 207
            G+ +K   F+R +IRE+ GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+KREE+SN L   R
Sbjct:   31 GRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMR 98          
The following BLAST results are available for this feature:
BLAST of CK938581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL362_ARATH4.402e-2778.4860S ribosomal protein L36-2 OS=Arabidopsis thalian... [more]
RL363_ARATH2.185e-2677.2260S ribosomal protein L36-3 OS=Arabidopsis thalian... [more]
RL361_ARATH3.727e-2677.2260S ribosomal protein L36-1 OS=Arabidopsis thalian... [more]
RL36_ENTCP3.610e-2166.2260S ribosomal protein L36 OS=Enteromorpha compress... [more]
RL36_ICTPU8.322e-1860.2760S ribosomal protein L36 OS=Ictalurus punctatus G... [more]
RL36_XENTR1.854e-1760.2960S ribosomal protein L36 OS=Xenopus tropicalis GN... [more]
RL36_XENLA1.854e-1760.2960S ribosomal protein L36 OS=Xenopus laevis GN=rpl... [more]
RL36_PONAB2.421e-1760.2960S ribosomal protein L36 OS=Pongo abelii GN=RPL36... [more]
RL36_LAPHA2.421e-1760.2960S ribosomal protein L36 OS=Lapemis hardwickii GN... [more]
RL36_HUMAN2.421e-1760.2960S ribosomal protein L36 OS=Homo sapiens GN=RPL36... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004440_H05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938581 ID=CK938581; Name=CK938581; organism=Citrus sinensis; type=EST; length=298bp
GGGGGGAAAGCAAGCAAAAGGGTCCACTTCATGAGGACTGTGATTAGGGA
AATTGCTGGCTTTGCACCCTATGAGAAAAGGATCACTGAGCTTCTTAAAG
TCGGCAAGGACAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTTGGCACT
CACAAGAGGGCAAAGAAGAAGCGGGAGGAGATGTCTAATGCCCTTCGCAA
GAGTAGGGCCCCTGGAGGTGGAGAGAAGAAGAAGTGATGCGTAACTTTGC
TAGATGTCTTGTTCACCTGAACTTGGGTTATTAAATTTAGCACAGTGT
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