CK938578

Overview
NameCK938578
Unique NameCK938578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:1248..1857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938578 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.106e-34
Identity = 72/135 (53.33%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    4 LSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHV-IPMVNETQGD--KPLKKSVRETQEEVTRHWKRFVKGRRAGAC 399
            +SKDVGVP+VAFSL+DSS +TVFE+SE LR+FGWIVPAYTMP +AE++AVLRVV+REDFS SL ERL+S IE++L E+++ P R+ TK   V    V + +GD          ETQ+++ +HW++    + +G C
Sbjct:  368 VSKDVGVPVVAFSLRDSSKYTVFEVSEHLRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKKTSGVC 502          
BLAST of CK938578 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.069e-33
Identity = 71/128 (55.47%), Postives = 95/128 (74.22%), Query Frame = 1
Query:    4 LSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRR 387
            +SK++GVPLVAFSLKD+  H  FEISE LR+FGWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+VL E+++LP+RV+ K A V        G +  KK+  E Q E+   WK+FV+ ++
Sbjct:  367 ISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLA-VAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKK 493          
BLAST of CK938578 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.766e-32
Identity = 74/137 (54.01%), Postives = 100/137 (72.99%), Query Frame = 1
Query:    4 LSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDK---PLKKSVRETQEEVTRHWKRFVKGRR--AGAC 399
            +SKD GVPLVAFSLKDSS HT FEIS+ LR++GWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+V++E++ LPSRV  K + +    +E+  D     +KKS  + Q ++   WK+FV  R+  +G C
Sbjct:  367 VSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKIS-LGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRKKTSGIC 502          
BLAST of CK938578 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.550e-31
Identity = 73/134 (54.48%), Postives = 97/134 (72.39%), Query Frame = 1
Query:    4 LSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRRA--GAC 399
            +SKD GVP+VAFSLKD S H  FEISE LR+FGWIVPAYTMPA+A+++ VLRVV+REDFSR+L ERL++ I +VL E+++LPS++S K    I  + E   +K ++K   E   EV   W++FVK R+   G C
Sbjct:  366 VSKDQGVPVVAFSLKDHSFHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKISKKMG--IEGIAENVKEKKMEK---EILMEVIVGWRKFVKERKKMNGVC 494          
The following BLAST results are available for this feature:
BLAST of CK938578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DCE_SOLLC1.106e-3453.33Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE_PETHY6.069e-3355.47Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE1_ARATH1.766e-3254.01Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH2.550e-3154.48Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004441_A11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938578 ID=CK938578; Name=CK938578; organism=Citrus sinensis; type=EST; length=610bp
GGGCTCTCCAAGGATGTTGGCGTACCCTTAGTAGCCTTTTCTTTGAAGGA
CAGCAGCGCACACACCGTGTTTGAGATATCCGAGGGTTTGAGAAAGTTTG
GGTGGATAGTTCCGGCCTATACAATGCCTGCTAATGCTGAAAATGTGGCG
GTTCTTCGGGTGGTTGTCCGGGAGGATTTCAGCCGTAGCTTGGTGGAAAG
ACTCATCTCACACATCGAGGAAGTTTTGAAGGAAATTGAATCGCTTCCAA
GTCGTGTATCCACAAAAACTGCCCATGTCATACCCATGGTCAACGAAACT
CAGGGTGATAAGCCACTTAAGAAGAGTGTGAGGGAGACTCAGGAGGAAGT
CACCAGGCACTGGAAGAGGTTCGTGAAAGGCCGGAGAGCTGGAGCATGCT
GAGGTTCCAAACATAAGATGAGACAAGATTTGTATGCTTGTTTGAATATT
AAAGCTATTGCTTCTTCCTGTTTTCTGTATATTCGTACTTGAAGGTGTGT
TTACTTTATGTGATTGTTGAAGCCTATTTATGTTTTCTTGCACGCTTGTG
AAGTGGCAAATAGAGGTATATGCTTATTGCCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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