CK938573

Overview
NameCK938573
Unique NameCK938573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:1..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_HEVBR (Superoxide dismutase [Mn], mitochondrial OS=Hevea brasiliensis GN=SODA PE=2 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 5.367e-105
Identity = 185/231 (80.09%), Postives = 198/231 (85.71%), Query Frame = 1
Query:   70 MALRSLAIRKAI--GLGKSVGLG-LRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP 753
            MALRSL  RK +      + GLG LRGLQT +LPDLPYDY ALEPAISGEIMQLHHQKHHQ Y+TNYNKA+EQL  A+ K D++ VV+LQ AIKFNGGGHVNHSIFWKNLAPV EGGGE PH SLGWAID  FGSLE LIQ M+AEGAALQGSGWVWL LD E K+LVVETTANQDPLVTK PTLVPLLGIDVWEHAYYLQYKNV+PDYLKNIW VMNWKYAS+VY KECP
Sbjct:    1 MALRSLVTRKNLPSAFKAATGLGQLRGLQTFSLPDLPYDYGALEPAISGEIMQLHHQKHHQTYITNYNKALEQLNDAIEKGDSAAVVKLQSAIKFNGGGHVNHSIFWKNLAPVREGGGELPHGSLGWAIDADFGSLEKLIQLMNAEGAALQGSGWVWLALDKELKKLVVETTANQDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYASEVYAKECP 231          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_NICPL (Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 1.196e-104
Identity = 176/228 (77.19%), Postives = 196/228 (85.96%), Query Frame = 1
Query:   70 MALRSLAIRKAIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP 753
            MALR+L  R+ +  G      LRGLQT +LPDLPYDY ALEPAISG+IMQLHHQ HHQ YVTNYNKA+EQL  A++K D  TV +L  AIKFNGGGH+NHSIFWKNLAPV EGGGEPP  SLGWAIDT+FGSLEAL+QKM+AEGAALQGSGWVWLG+D E KRLV+ETTANQDPLV+K   LVPLLGIDVWEHAYYLQYKNV+PDYLKNIW VMNWKYA++VY+KECP
Sbjct:    1 MALRTLVSRRTLATGLGFRQQLRGLQTFSLPDLPYDYGALEPAISGDIMQLHHQNHHQTYVTNYNKALEQLHDAISKGDAPTVAKLHSAIKFNGGGHINHSIFWKNLAPVREGGGEPPKGSLGWAIDTNFGSLEALVQKMNAEGAALQGSGWVWLGVDKELKRLVIETTANQDPLVSKGANLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYANEVYEKECP 228          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_PRUPE (Superoxide dismutase [Mn], mitochondrial OS=Prunus persica GN=SOD PE=2 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 3.479e-104
Identity = 177/228 (77.63%), Postives = 196/228 (85.96%), Query Frame = 1
Query:   70 MALRSLAIRKAIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP 753
            MALR+L  R+ +  G      LRGLQT +LPDLPY+Y ALEPAISG+IMQLHHQ HHQ YVTNYNKA+EQL  A++K D  TV +L  AIKFNGGGH+NHSIFWKNLAPV EGGGEPP  SLGWAIDT+FGSLEAL+QKM+AEGAALQGSGWVWL LD E K+LVVETTANQDPLVTK PTLVPLLGIDVWEHAYYLQYKNV+PDYLKNIW V+NWKYAS+VY+KE P
Sbjct:    1 MALRTLVSRRTLATGLGFRQQLRGLQTFSLPDLPYNYGALEPAISGDIMQLHHQNHHQTYVTNYNKALEQLHDAISKGDAPTVAKLHSAIKFNGGGHINHSIFWKNLAPVREGGGEPPKGSLGWAIDTNFGSLEALVQKMNAEGAALQGSGWVWLALDKELKKLVVETTANQDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKESP 228          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_CAPAN (Superoxide dismutase [Mn], mitochondrial OS=Capsicum annuum GN=SODA PE=2 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 6.141e-101
Identity = 173/228 (75.88%), Postives = 194/228 (85.09%), Query Frame = 1
Query:   70 MALRSLAIRKAIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP 753
            MALR+L  +K      +    LR +QT +LPDL YDY ALEPAISGEIMQLHHQKHHQ Y+TNYN A++QL  A+NK D+ TV +LQGAIKFNGGGH+NHS+FWKNLAP  EGGGEPP  SLG AIDT+FGSLEA+IQKM+AEGAALQGSGWVWLGLD E KRLV+ETTANQDPLV K P LVPLLGIDVWEHAYYLQYKNVKPDYLKNIW V+NWKYA++VY+KECP
Sbjct:    1 MALRNLMTKKPFAGILTFRQQLRCVQTFSLPDLSYDYGALEPAISGEIMQLHHQKHHQTYITNYNNALQQLHDAINKGDSPTVAKLQGAIKFNGGGHINHSVFWKNLAPTREGGGEPPKGSLGSAIDTNFGSLEAVIQKMNAEGAALQGSGWVWLGLDKELKRLVIETTANQDPLVIKGPNLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWKVINWKYAAEVYEKECP 228          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_ARATH (Superoxide dismutase [Mn], mitochondrial OS=Arabidopsis thaliana GN=SODA PE=1 SV=2)

HSP 1 Score: 366.696 bits (940), Expect = 1.048e-100
Identity = 175/229 (76.42%), Postives = 197/229 (86.03%), Query Frame = 1
Query:   70 MALRSLAIRKAIGLGKSVG---LGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 747
            MA+R +A RK +   K      L +RG+QT TLPDLPYDY ALEPAISGEIMQ+HHQKHHQAYVTNYN A+EQL QA+NK D STVV+LQ AIKFNGGGHVNHSIFWKNLAP  EGGGEPP  SLG AID HFGSLE L++KMSAEGAA+QGSGWVWLGLD E K+LVV+TTANQDPLVTK  +LVPL+GIDVWEHAYYLQYKNV+P+YLKN+W V+NWKYAS+VY+KE
Sbjct:    1 MAIRCVASRKTLAGLKETSSRLLRIRGIQTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGGHVNHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEGLVKKMSAEGAAVQGSGWVWLGLDKELKKLVVDTTANQDPLVTKGGSLVPLVGIDVWEHAYYLQYKNVRPEYLKNVWKVINWKYASEVYEKE 229          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM1_MAIZE (Superoxide dismutase [Mn] 3.1, mitochondrial OS=Zea mays GN=SODA.4 PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 5.035e-95
Identity = 167/231 (72.29%), Postives = 188/231 (81.39%), Query Frame = 1
Query:   70 MALRSLAIRKAI-----GLGK--SVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 741
            MALR+LA +K +     G G+  +     RG+ TVTLPDL YD+ ALEPAISGEIM+LHHQKHH  YV NYNKA+EQL  A++K D S VVQLQ AIKFNGGGHVNHSIFWKNL P+ EGGGEPPH  LGWAID  FGS EAL++KM+AEGAALQGSGWVWL LD E K++ VETTANQDPLVTK  +LVPLLGIDVWEHAYYLQYKNV+PDYL NIW VMNWKYA +VY+
Sbjct:    1 MALRTLASKKVLSFPFGGAGRPLAAAASARGVTTVTLPDLSYDFGALEPAISGEIMRLHHQKHHATYVANYNKALEQLETAVSKGDASAVVQLQAAIKFNGGGHVNHSIFWKNLKPISEGGGEPPHGKLGWAIDEDFGSFEALVKKMNAEGAALQGSGWVWLALDKEAKKVSVETTANQDPLVTKGASLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 231          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_ORYSJ (Superoxide dismutase [Mn], mitochondrial OS=Oryza sativa subsp. japonica GN=SODA PE=2 SV=2)

HSP 1 Score: 346.665 bits (888), Expect = 1.122e-94
Identity = 166/227 (73.13%), Postives = 182/227 (80.18%), Query Frame = 1
Query:   70 MALRSLAIRK---AIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 741
            MALR+LA RK   A  L  +     RG+ TV LPDLPYDY ALEPAISGEIM+LHHQKHH  YV NYNKA+EQL  A+ K D   +V LQ AIKFNGGGHVNHSIFW NL P+ EGGG+PPH+ LGWAID  FGS EAL++KMSAEGAALQGSGWVWL LD E K+L VETTANQDPLVTK   LVPLLGIDVWEHAYYLQYKNV+PDYL NIW VMNWKYA +VY+
Sbjct:    1 MALRTLASRKTLAAAALPLAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAVAKGDAPAIVHLQSAIKFNGGGHVNHSIFWNNLKPISEGGGDPPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVTKGANLVPLLGIDVWEHAYYLQYKNVRPDYLSNIWKVMNWKYAGEVYE 227          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM4_MAIZE (Superoxide dismutase [Mn] 3.4, mitochondrial OS=Zea mays GN=SODA.3 PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.465e-94
Identity = 166/229 (72.49%), Postives = 185/229 (80.79%), Query Frame = 1
Query:   70 MALRSLAIRKAI-----GLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 741
            MALR+LA + A+     G  +      RG+ TV LPDL YD+ ALEPAISGEIM+LHHQKHH  YV NYNKA+EQL  A+ K D S VVQLQGAIKFNGGGHVNHSIFWKNL P+ EGGGEPPH  LGWAID  FGS EAL+++M+AEGAALQGSGWVWL LD E K+L VETTANQDPLVTK  +LVPLLGIDVWEHAYYLQYKNV+PDYL NIW VMNWKYA +VY+
Sbjct:    1 MALRTLASKNALSFALGGAARPSAASARGVTTVALPDLSYDFGALEPAISGEIMRLHHQKHHATYVGNYNKALEQLDAAVAKGDASAVVQLQGAIKFNGGGHVNHSIFWKNLKPISEGGGEPPHGKLGWAIDEDFGSFEALVKRMNAEGAALQGSGWVWLALDKEPKKLSVETTANQDPLVTKGASLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 229          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM3_MAIZE (Superoxide dismutase [Mn] 3.3, mitochondrial OS=Zea mays GN=SODA.2 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 2.339e-92
Identity = 161/229 (70.31%), Postives = 183/229 (79.91%), Query Frame = 1
Query:   70 MALRSLAIRKAI-----GLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 741
            MALR+LA + A+     G  +      RG+ TV LPDL YD+ ALEP ISGEIM+LHHQK+H  YV NYNKA+EQ+   + K D S VVQLQGAIKFNGGGHVNHSIFWKNL P+ EGGGEPPH  LGWAID  FGS EAL+++M+AEGAALQGSGWVWL LD E K++ VETTANQDPLVTK  +LVPLLGIDVWEHAYYLQYKNV+PDYL NIW VMNWKYA +VY+
Sbjct:    1 MALRTLASKNALSFALGGAARPSAESARGVTTVALPDLSYDFGALEPVISGEIMRLHHQKNHATYVVNYNKALEQIDDVVVKGDDSAVVQLQGAIKFNGGGHVNHSIFWKNLKPISEGGGEPPHGKLGWAIDEDFGSFEALVKRMNAEGAALQGSGWVWLALDKEAKKVSVETTANQDPLVTKGASLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 229          
BLAST of CK938573 vs. ExPASy Swiss-Prot
Match: SODM_PEA (Superoxide dismutase [Mn], mitochondrial OS=Pisum sativum GN=SODA PE=2 SV=2)

HSP 1 Score: 336.265 bits (861), Expect = 1.516e-91
Identity = 168/238 (70.59%), Postives = 188/238 (78.99%), Query Frame = 1
Query:   70 MALRSLAIRKAIGL-----GKSVGLGL-------RGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 747
            MA R+L  RK +        K +G  +       RGL   TLPDL YDY ALEP ISGEIMQ+HHQKHHQ Y+TNYNKA+EQL  A+ K DTST V+LQ AIKFNGGGH+NHSIFWKNLAPV EGGGEPP  SLGWAIDT+FGSLEALIQK++AEGAALQ     WLGLD + KRLVVETT  QDPLVTK  +LVPLLGIDVWEHAYYLQYKNV+PDYLKNIW V+NWK+AS+VY+KE
Sbjct:    1 MAARTLLCRKTLSSVLRNDAKPIGAAIAAASTQSRGLHVFTLPDLAYDYGALEPVISGEIMQIHHQKHHQTYITNYNKALEQLHDAVAKADTSTTVKLQNAIKFNGGGHINHSIFWKNLAPVSEGGGEPPKESLGWAIDTNFGSLEALIQKINAEGAALQ-----WLGLDKDLKRLVVETT--QDPLVTKGASLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKHASEVYEKE 231          
The following BLAST results are available for this feature:
BLAST of CK938573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_HEVBR5.367e-10580.09Superoxide dismutase [Mn], mitochondrial OS=Hevea ... [more]
SODM_NICPL1.196e-10477.19Superoxide dismutase [Mn], mitochondrial OS=Nicoti... [more]
SODM_PRUPE3.479e-10477.63Superoxide dismutase [Mn], mitochondrial OS=Prunus... [more]
SODM_CAPAN6.141e-10175.88Superoxide dismutase [Mn], mitochondrial OS=Capsic... [more]
SODM_ARATH1.048e-10076.42Superoxide dismutase [Mn], mitochondrial OS=Arabid... [more]
SODM1_MAIZE5.035e-9572.29Superoxide dismutase [Mn] 3.1, mitochondrial OS=Ze... [more]
SODM_ORYSJ1.122e-9473.13Superoxide dismutase [Mn], mitochondrial OS=Oryza ... [more]
SODM4_MAIZE1.465e-9472.49Superoxide dismutase [Mn] 3.4, mitochondrial OS=Ze... [more]
SODM3_MAIZE2.339e-9270.31Superoxide dismutase [Mn] 3.3, mitochondrial OS=Ze... [more]
SODM_PEA1.516e-9170.59Superoxide dismutase [Mn], mitochondrial OS=Pisum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004441_A05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938573 ID=CK938573; Name=CK938573; organism=Citrus sinensis; type=EST; length=915bp
GGGGGGACTTAATTTAGCTCGTCTCGGTTGAATTTCGAACGATCAAGAAA
CGTCACCGTTTCATTCGCGATGGCTCTCCGTTCGCTTGCCATCAGAAAAG
CTATAGGCTTGGGTAAATCCGTAGGATTAGGGCTGCGTGGACTGCAGACG
GTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGAT
TAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACG
TTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAA
GTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGG
CGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTC
ACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGAC
ACGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGG
TGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTGGATACAGAGT
TTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCGCTGGTGACT
AAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGC
ATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTGAAAAACATTT
GGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCAGAAAGAATGC
CCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCGTTTGATCTGG
GTTCTCTCTTGGGTTCAAGAGACGAATATCCTTGCAGCTTTTCACGCTGA
AGTGACAATAAAACGATATTTTGCAGATGATGACAGACACCCTTTCTTTT
GCAGTGAGTGTTACT
back to top