EY649595

Overview
NameEY649595
Unique NameEY649595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.421e-15
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 297
            ++ KR IP+     +  KT K+FVGG+P    E+EF++FF QFG V +  +M D  T R RGFGF+T++ E AV+  +++   + + G  VEVK+A PK
Sbjct:  232 IDPKRAIPR----EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ-PYITIHGKPVEVKRATPK 325          

HSP 2 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 32/80 (40.00%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   61 KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 300
            K+F+GG+     +D  +D+F QFGEV +  +MRD +T RSRGFGF+TF   + V+++++K + L+  G  ++ K+A P++
Sbjct:  164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLD--GKIIDPKRAIPRE 241          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.680e-14
Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 297
            ++ KR IP+     +  KT KIFVGGI   V   EF++FF Q+G + + Q+M D  T +SRGFGF+T+D+  AV D + +   ++    ++E+K+AEP+
Sbjct:  228 IDPKRAIPR----DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV-DRVCQNKFIDFKDRKIEIKRAEPR 321          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: SQD_DROME (RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 7.798e-14
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1
Query:   61 KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPN 306
            KIFVGG+ + ++++E K +F QFG + E ++  D   S+ +GF FITFD+EQ V DLL K  K ++AG +V+VK+A PK  N
Sbjct:  137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRATPKPEN 217          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.330e-13
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    1 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 312
            V+ K   P+ A      +TKKIFVGG+ +    ++ K +F QFG +++  +M D  T+R RGFGF+TF +E  VD  + + +  E+    VE KKA+PK+  LP
Sbjct:   99 VDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK-VCEIHFHEINNKMVECKKAQPKEVMLP 201          

HSP 2 Score: 69.707 bits (169), Expect = 2.124e-11
Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   61 KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 300
            K+F+GG+    + +  +D+F ++G++ E  +M+D +T RSRGFGF+TF    +VD +L +G   EL G +V+ K A P++
Sbjct:   30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTH-ELDGKKVDPKVAFPRR 108          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.269e-13
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 348
            ++ K   P+ A      +TKKIFVGG+  +   ++ K +F QFG+V +  +M D +T+R RGFGF+TF++E  V+  + + +  E+    VE KKA+PK+   P  S R  +   P
Sbjct:   90 IDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.963e-13
Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 312
            ++ K   P+ A      +TKKIFVGG+ ++   ++ K +F QFG+V++  +M D +T+R RGFGF+TF+ E  V+  + + +  E+    VE KKA+PK+   P
Sbjct:   91 IDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIHFHEINNKMVECKKAQPKEVMFP 193          

HSP 2 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   28 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 300
            G+         K+F+GG+    + D  +D+F +FGE++E  +MRD +T RSRGFGF+TF    +VD +L + +  EL    ++ K A P++
Sbjct:   11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHH-ELDSKTIDPKVAFPRR 100          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.963e-13
Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 312
            ++ K   P+ A      +TKKIFVGG+ ++   ++ K +F QFG+V++  +M D +T+R RGFGF+TF+ E  V+  + + +  E+    VE KKA+PK+   P
Sbjct:   91 IDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIHFHEINNKMVECKKAQPKEVMFP 193          

HSP 2 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   28 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 300
            G+         K+F+GG+    + D  +D+F +FGE++E  +MRD +T RSRGFGF+TF    +VD +L + +  EL    ++ K A P++
Sbjct:   11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHH-ELDSKTIDPKVAFPRR 100          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.963e-13
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 348
            ++ K   P+ A      +TKKIFVGG+  +   ++ K +F QFG+V +  +M D +T+R RGFGF+TF++E  V+  + + +  E+    VE KKA+PK+   P  S R  +   P
Sbjct:   90 IDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.963e-13
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 348
            ++ K   P+ A      +TKKIFVGG+  +   ++ K +F QFG+V +  +M D +T+R RGFGF+TF++E  V+  + + +  E+    VE KKA+PK+   P  S R  +   P
Sbjct:   90 IDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204          
BLAST of EY649595 vs. ExPASy Swiss-Prot
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.963e-13
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   40 SKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQP 318
            S + K+ KIFVGGIP +  E E +++F +FG V E  ++ D    R RGFGFITF+ EQ+VD  +   +  ++ G +VEVK+AEP+      P
Sbjct:  107 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKSQAP 198          
The following BLAST results are available for this feature:
BLAST of EY649595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YHKF_SCHPO1.421e-1542.42Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
HRP1_YEAST2.680e-1440.40Nuclear polyadenylated RNA-binding protein 4 OS=Sa... [more]
SQD_DROME7.798e-1447.56RNA-binding protein squid OS=Drosophila melanogast... [more]
MSIR6_DROME1.330e-1339.42RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]
MSI1H_HUMAN2.269e-1336.21RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
MSI2H_MOUSE2.963e-1337.50RNA-binding protein Musashi homolog 2 OS=Mus muscu... [more]
MSI2H_HUMAN2.963e-1337.50RNA-binding protein Musashi homolog 2 OS=Homo sapi... [more]
MSI1H_RAT2.963e-1336.21RNA-binding protein Musashi homolog 1 OS=Rattus no... [more]
MSI1H_MOUSE2.963e-1336.21RNA-binding protein Musashi homolog 1 OS=Mus muscu... [more]
DAZP1_HUMAN2.963e-1343.01DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-D03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649595 ID=EY649595; Name=EY649595; organism=Citrus sinensis; type=EST; length=799bp
GTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTCTAAGGATTT
CAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAGTGAATGAAG
ATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAAGAGCACCAA
ATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGGATTTATCAC
TTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGCAAAGGGGAACAAGC
TCGAGTTGGCTGGAGCCCAGGTGGAGGTCAAGAAAGCAGAACCAAAGAAA
CCAAACCTACCACAACCATCTTATAGGCGATACAATAATCCTAAACCCGC
ATATGGTAGTGGCTTTGGAGATGCTTACGGTGGATATGGAGGTGGTGGCT
TTGCTGGCGGTGGCTTTGGTGGCANCGGCGGTGGAGGTGGAGGCGGTGGT
TATAGGTCTAGTGGGGCATATGGTGTTAGAGGTGGTGGATATGGAGGATA
CGGTGTTGGTGGTGAATTTGGTGGTATGGAGGATATGGTGGTGGTNTGGG
AGCTACAGGGGAGAACCCTCCTCCCCTGGGTCCTCTGGGTCCCTCCGGAG
CTTTACCCCGAGCTCCGATGGAACTGGTGATTATGGTGGGCCTCATGAAA
ATTATGGGGGATTTGGTGCAATGGTTGTTGGGGCCGCCGCGGCTTTGGAG
GCCGGCCCATGGCTTTTAACTCGCCCCTCCGATGGGTTCGGGTGTTCCCA
CGGAAGCCCCTTTCTTGGAACTAAAGGGGATTTGGGCGCCCAGGGGGGG
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