CK938556

Overview
NameCK938556
Unique NameCK938556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938556_ssr770 microsatellite CK938556_ssr770:770..781. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9428 contig Csv1_Contig9428:433..1252. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938556 vs. ExPASy Swiss-Prot
Match: 1433B_VICFA (14-3-3-like protein B OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.171e-69
Identity = 128/156 (82.05%), Postives = 143/156 (91.67%), Query Frame = 3
Query:    9 ISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 476
            I  D+M+VIDEHLIPS   GESTVFYYKMKGDYYRYLAEFKTG+E+K+  D SMKAY++A+T AEAEL PTHPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAISELDTL+EESYKDSTLIMQLLRDNLTLWTSDIPED G+++QK + +AK
Sbjct:   99 ICIDVMRVIDEHLIPSAAAGESTVFYYKMKGDYYRYLAEFKTGNEKKEAGDQSMKAYESATTAAEAELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED-GEDSQKANGTAK 253          
BLAST of CK938556 vs. ExPASy Swiss-Prot
Match: 14339_SOLLC (14-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 PE=2 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 6.753e-69
Identity = 127/156 (81.41%), Postives = 145/156 (92.95%), Query Frame = 3
Query:    9 ISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 476
            I  DIM VID+HLIPSC+ GESTVFY+KMKGDYYRYLAEFK G+++K+VA+LS+KAYQAA+T AEAEL+PTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELD+L+E+SYKDSTLIMQLLRDNLTLWTSD+PED  ++AQK D + K
Sbjct:   99 ICNDIMVVIDQHLIPSCSAGESTVFYHKMKGDYYRYLAEFKAGNDKKEVAELSLKAYQAATTAAEAELAPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLPED-AEDAQKGDATNK 253          
BLAST of CK938556 vs. ExPASy Swiss-Prot
Match: 1433D_SOYBN (14-3-3-like protein D OS=Glycine max GN=GF14D PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 8.820e-69
Identity = 127/156 (81.41%), Postives = 144/156 (92.31%), Query Frame = 3
Query:    9 ISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 476
            I  D+M+VIDEHLIPS   GESTVFYYKMKGDYYRYLAEFK+G+E+K+ AD SMKAY++A+  AEA+L PTHPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAISELDTL+EESYKDSTLIMQLLRDNLTLWTSDIPED G++AQK++ +AK
Sbjct:   99 ICNDVMRVIDEHLIPSAAAGESTVFYYKMKGDYYRYLAEFKSGNEKKEAADQSMKAYESATAAAEADLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED-GEDAQKVNGTAK 253          
BLAST of CK938556 vs. ExPASy Swiss-Prot
Match: 1433C_SOYBN (14-3-3-like protein C OS=Glycine max GN=GF14C PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.566e-68
Identity = 130/152 (85.53%), Postives = 140/152 (92.11%), Query Frame = 3
Query:    9 ISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMD 464
            I +DIM VIDE+LIPS + GE +VF+YKMKGDYYRYLAEFK+GDERK+ AD SMKAYQ ASTTAEAEL+ THPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG  E QK+D
Sbjct:   99 ICSDIMTVIDEYLIPSSSSGEPSVFFYKMKGDYYRYLAEFKSGDERKEAADHSMKAYQLASTTAEAELASTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG--EEQKVD 248          
BLAST of CK938556 vs. ExPASy Swiss-Prot
Match: 14338_SOLLC (14-3-3 protein 8 OS=Solanum lycopersicum GN=TFT8 PE=2 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 7.467e-68
Identity = 127/156 (81.41%), Postives = 141/156 (90.38%), Query Frame = 3
Query:    9 ISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 476
            I  +IM VIDEHLIPSCT GESTVFYYKMKGDYYRYLAEFKTGD++K+V+DLS+KAYQ A+TTAEAEL  THPIRLGLALNFSVFYYEIMNSPERAC LAKQ FDEAISELD+L+E++YKD TLI+QLLRDNLTLWTSDIPED G+EA K D + K
Sbjct:   99 ICNNIMTVIDEHLIPSCTAGESTVFYYKMKGDYYRYLAEFKTGDDKKEVSDLSLKAYQTATTTAEAELPITHPIRLGLALNFSVFYYEIMNSPERACQLAKQVFDEAISELDSLNEDNYKDGTLILQLLRDNLTLWTSDIPED-GEEAPKGDAANK 253          
BLAST of CK938556 vs. ExPASy Swiss-Prot
Match: 14339_ARATH (14-3-3-like protein GF14 mu OS=Arabidopsis thaliana GN=GRF9 PE=1 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 9.752e-68
Identity = 126/156 (80.77%), Postives = 141/156 (90.38%), Query Frame = 3
Query:    9 ISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDISAK 476
            I  DIM V+DEHLIPS + GESTVF+ KMKGDYYRYLAEFK+G+ERK+ AD S+KAY+ A+T AEA+L PTHPIRLGLALNFSVFYYEIMN+PERACHLAKQAFDEAISELDTL+EESYKDSTLIMQLLRDNLTLWTSDI E+GGD+A K + SAK
Sbjct:   99 ICIDIMSVLDEHLIPSASEGESTVFFNKMKGDYYRYLAEFKSGNERKEAADQSLKAYEIATTAAEAKLPPTHPIRLGLALNFSVFYYEIMNAPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDISEEGGDDAHKTNGSAK 254          
BLAST of CK938556 vs. ExPASy Swiss-Prot
Match: 14337_SOLLC (14-3-3 protein 7 OS=Solanum lycopersicum GN=TFT7 PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 2.033e-65
Identity = 121/154 (78.57%), Postives = 138/154 (89.61%), Query Frame = 3
Query:    6 KISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG----GDEAQ 455
            KI +DI+ VIDEHL+PS T GESTVFYYKMKGDYYRYLAEFK GD+RK+ ++ S+KAY+AA+ TA ++L+PTHPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAI+ELD+LSEESYKDSTLIMQLLRDNLTLWTSD+ E G    GDE Q
Sbjct:   96 KICSDILSVIDEHLVPSSTTGESTVFYYKMKGDYYRYLAEFKAGDDRKEASEQSLKAYEAATATASSDLAPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLEEGGEHSKGDERQ 249          
BLAST of CK938556 vs. ExPASy Swiss-Prot
Match: 14312_ARATH (14-3-3-like protein GF14 iota OS=Arabidopsis thaliana GN=GRF12 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.248e-64
Identity = 119/154 (77.27%), Postives = 133/154 (86.36%), Query Frame = 3
Query:    9 ISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQKMDIS 470
            I  DI+ +ID+HLIP  T GE+TVFYYKMKGDYYRYLAEFKT  ERK+ A+ S+K Y+AA+  A  EL  THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAI+ELDTLSEESYKDSTLIMQLLRDNLTLWTSD+PEDGG++  K + S
Sbjct:  102 ICQDILTIIDQHLIPHATSGEATVFYYKMKGDYYRYLAEFKTEQERKEAAEQSLKGYEAATQAASTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEDNIKTEES 255          
BLAST of CK938556 vs. ExPASy Swiss-Prot
Match: 1433_TOBAC (14-3-3-like protein OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.541e-64
Identity = 118/148 (79.73%), Postives = 133/148 (89.86%), Query Frame = 3
Query:   24 MQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG----GDEAQ 455
            + VIDEH++PS T GESTVFYYKMKGDYYRYLAEFK+GD+RK+ AD S+KAY+AA+ TA A+L+PTHPIRLGLALNFSVFYYEI+NSPERACHLAKQAFDEAI+ELD+LSEESYKDSTLIMQLLRDN TLWTSD+ E G    GDE Q
Sbjct:  101 LSVIDEHVVPSSTSGESTVFYYKMKGDYYRYLAEFKSGDDRKEAADQSLKAYEAATATASADLAPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNFTLWTSDLEEGGEHSKGDERQ 248          
BLAST of CK938556 vs. ExPASy Swiss-Prot
Match: 14311_ARATH (14-3-3-like protein GF14 omicron OS=Arabidopsis thaliana GN=GRF11 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.326e-61
Identity = 112/145 (77.24%), Postives = 132/145 (91.03%), Query Frame = 3
Query:    6 KISTDIMQVIDEHLIPSCTGGESTVFYYKMKGDYYRYLAEFKTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG 440
            KI  DI+ VID+HL+P  T GESTVFYYKMKGDY+RYLAEFK+G +R++ ADLS+KAY+AA+++A  ELS THPIRLGLALNFSVFYYEI+NSPERACHLAK+AFDEAI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD+ E G
Sbjct:   96 KICYDILAVIDKHLVPFATSGESTVFYYKMKGDYFRYLAEFKSGADREEAADLSLKAYEAATSSASTELSTTHPIRLGLALNFSVFYYEILNSPERACHLAKRAFDEAIAELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLEEGG 240          
The following BLAST results are available for this feature:
BLAST of CK938556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433B_VICFA5.171e-6982.0514-3-3-like protein B OS=Vicia faba PE=2 SV=1[more]
14339_SOLLC6.753e-6981.4114-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 P... [more]
1433D_SOYBN8.820e-6981.4114-3-3-like protein D OS=Glycine max GN=GF14D PE=2... [more]
1433C_SOYBN2.566e-6885.5314-3-3-like protein C OS=Glycine max GN=GF14C PE=2... [more]
14338_SOLLC7.467e-6881.4114-3-3 protein 8 OS=Solanum lycopersicum GN=TFT8 P... [more]
14339_ARATH9.752e-6880.7714-3-3-like protein GF14 mu OS=Arabidopsis thalian... [more]
14337_SOLLC2.033e-6578.5714-3-3 protein 7 OS=Solanum lycopersicum GN=TFT7 P... [more]
14312_ARATH2.248e-6477.2714-3-3-like protein GF14 iota OS=Arabidopsis thali... [more]
1433_TOBAC6.541e-6479.7314-3-3-like protein OS=Nicotiana tabacum PE=2 SV=1[more]
14311_ARATH2.326e-6177.2414-3-3-like protein GF14 omicron OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004441_C05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938556 ID=CK938556; Name=CK938556; organism=Citrus sinensis; type=EST; length=820bp
GGGGGAAGATCAGCACTGATATTATGCAAGTCATTGATGAGCATTTGATC
CCTTCCTGCACCGGAGGTGAATCCACTGTGTTTTACTATAAAATGAAAGG
TGATTATTATCGGTACTTGGCAGAGTTTAAGACTGGTGATGAGAGGAAAG
ATGTTGCTGATCTGTCAATGAAAGCCTATCAGGCAGCTTCTACTACCGCA
GAAGCTGAATTGTCTCCTACCCACCCCATCCGACTTGGTTTGGCCTTGAA
CTTCTCAGTTTTTTACTATGAGATTATGAACTCTCCTGAAAGGGCATGCC
ACCTTGCAAAGCAGGCCTTTGATGAAGCCATCTCAGAATTGGATACATTA
AGTGAGGAATCTTACAAAGACAGCACGTTGATAATGCAGCTATTGAGGGA
CAACCTCACTCTTTGGACTTCTGACATACCAGAGGATGGAGGTGATGAAG
CCCAGAAAATGGACATCTCTGCTAAAGAGGGTGAAGGTGAAGATTGAAGA
AGCAGAGGTGGGTTTGTTTTCCTATTTTGGAGCAGAGTTGCAATCTTTGT
TGTTTTCTGTCCTCAGTGAACCAGCCAGGAGCTTGGGAGCTCTAGCATAT
GATAGCAAGGAAGCTGCAATACCTTTATGACTCCCGGTGTTTTTCTTAGT
TTACAAGAGACACTCAAGTACTGTTATTGTGCTGTTCCTATAATGTGGGT
GTTATCTTCACTGTCAAGAGTTTCATGATTGGACTGCTTGTATCATTTGC
ATCCCAGAATCTTTTATATCTGCTGCTGCTGATCAATTTGGACTTAGTGG
AAAAAAAAAAAAAAAAAAAA
back to top