CX675509

Overview
NameCX675509
Unique NameCX675509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX675509 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.342e-11
Identity = 54/218 (24.77%), Postives = 97/218 (44.50%), Query Frame = 3 
Query:    6 ISDGGVHFCNKAFKALLTKYSITHKVVTPYHPQTSGQVEISNREIKHILEKTVRPDRKDWSLRLDDALWAYRTAFKTPIGMSPYRLVYGKACHLPVELEHRAYWAIKKFNFDMQQASSERRLQLAELEEIRNDAYENAKIYRQRMKVFHDKQIMRKSFTPGQKVLLFNSRLHLFPGKLRSRWSGPFIVHTVFPHGAIEIKDPKNDVTFKVNGQRLKPY 659
            I+D G  + N     L     I +   T +H QT G VE S+R +   +   +  D+ DW + L   ++ + T         PY LV+G+  +LP    ++ +     +N D     S+ RL++A        A +  + ++++ K  +D ++       G KVLL N   H    KL  +++GP+ + ++  +  I +   KN     V+  RLK +
Sbjct: 1029 ITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHF-NKLHSIEPIYNIDDYAKESKYRLEVAYAR-----ARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLRNEVGH----KLDFKYTGPYKIESIGDNNNITLLTNKNKKQI-VHKDRLKKF 1235
The following BLAST results are available for this feature:
BLAST of CX675509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
POL4_DROME6.342e-1124.77Retrovirus-related Pol polyprotein from transposon... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_62G01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G01-N2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675509 ID=CX675509; Name=CX675509; organism=Citrus sinensis; type=EST; length=812bp
CAATAATCAGTGATGGTGGTGTCCACTTTTGTAACAAAGCATTCAAAGCT
CTTTTGACAAAGTATTCAATCACACACAAAGTGGTGACCCCGTATCATCC
GCAAACCAGTGGCCAAGTTGAGATCTCCAATCGAGAAATAAAGCACATAT
TAGAAAAGACGGTGAGGCCGGACAGAAAAGATTGGTCATTAAGACTTGAT
GATGCCTTATGGGCATATAGAACGGCTTTCAAGACCCCGATTGGGATGTC
ACCCTACAGGCTAGTGTATGGAAAAGCTTGCCACCTACCTGTGGAACTCG
AGCATCGTGCATATTGGGCCATCAAGAAATTCAATTTTGACATGCAGCAA
GCCAGCTCAGAAAGAAGATTACAGCTGGCAGAACTTGAAGAAATTCGCAA
TGATGCATACGAAAATGCCAAAATTTACAGGCAACGAATGAAAGTCTTCC
ATGATAAGCAAATTATGAGAAAATCGTTCACTCCAGGTCAGAAAGTGCTT
TTATTCAATTCTCGCTTGCACCTATTCCCAGGTAAGTTACGCTCTCGTTG
GTCTGGTCCCTTTATTGTTCATACTGTTTTTCCACATGGGGCAATTGAAA
TTAAGGACCCAAAGAACGATGTCACGTTTAAAGTTAATGGTCAAAGATTA
AAGCCATATCTAGAGTACCAACCACATGACGAAGACACCGAAATAAATTT
GAGTGACCCACCAAATTTGAATTGATTTTTTTTCTTTTCGTTGGTTTGAT
TTTTCTTTCTTTCTTTTTATTATTATTCTTTTGCTAATTGAAATTGTTTT
TGCATAAAGTGT
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