EY665945

Overview
NameEY665945
Unique NameEY665945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665945 vs. ExPASy Swiss-Prot
Match: FMDA_METME (Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.118e-43
Identity = 82/154 (53.25%), Postives = 107/154 (69.48%), Query Frame = 1
Query:   70 VVPIDLKKKPNEQKLTLHNRWHPEIPPVAEVKVGELFRVEMVDWTGGAIKDNDSAIDVKTLDLSTVHYLSGPIKVVDEQGIPAKPGDLLAVEICNLGPLPGDEWGYTATFDRENGGGFLTDHFPCATKAIWYFEGIYAYSPHITGVRFPGLTSP 531
            +V +DL KKP EQ   +HNRWHP++P +A VK G+ FRVE +DWTGG I +NDSA DV+ +DL+ VHYLSGPI V       A+PGDL+ V+I ++G     +WG+   F +ENGGGFLTDHFP A+K IW F G+Y  S H+  VR+ G+  P
Sbjct:    4 IVKLDLDKKPWEQDGQIHNRWHPDLPMIAMVKPGDEFRVECMDWTGGQIGNNDSANDVRDVDLTQVHYLSGPIGVEG-----AEPGDLMVVDILDVGTFDDSQWGFNGLFAKENGGGFLTDHFPEASKTIWDFHGVYTTSRHVPKVRYAGIMHP 152          
BLAST of EY665945 vs. ExPASy Swiss-Prot
Match: FMDA_SCHPO (Putative formamidase C869.04 OS=Schizosaccharomyces pombe GN=SPAC869.04 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.854e-41
Identity = 80/157 (50.96%), Postives = 106/157 (67.52%), Query Frame = 1
Query:   61 PTVVVPIDLKKKPNEQKLTLHNRWHPEIPPVAEVKVGELFRVEMVDWTGGAIKDNDSAIDVKTLDLSTVHYLSGPIKVVDEQGIPAKPGDLLAVEICNLGPLPGDEWGYTATFDRENGGGFLTDHFPCATKAIWYFEGIYAYSPHITGVRFPGLTSP 531
            P  +V +DL K   EQ   LHNRWHP+IP    +  GE  ++E +DWTGG IK++DSA D+K +DL+ +HYLSGP ++       A+PGD+L VEI ++ PL    WGY+  F +ENGGGFL +H+P A KA++ FEGI+  S HI GVRFPGL  P
Sbjct:    3 PRTIVKVDLNKPAWEQP-NLHNRWHPDIPFAESIDEGETVKIECLDWTGGQIKNDDSAEDIKNVDLTRIHYLSGPFEIKG-----AEPGDVLVVEIQDVQPLENQPWGYSGIFAKENGGGFLDEHYPKAAKAVFDFEGIFCSSRHIPGVRFPGLIHP 153          
BLAST of EY665945 vs. ExPASy Swiss-Prot
Match: AMDA_MYCSM (Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.050e-38
Identity = 81/164 (49.39%), Postives = 104/164 (63.41%), Query Frame = 1
Query:   61 PTVVVPIDLKKKPNEQKLTLHNRWHPEIPPVAEVKVGELFRVEMVDWTGGAIKDNDSAIDVKTLDLSTVHYLSGPIKVVDEQGIPAKPGDLLAVEICNLGPLP-------GDEWGYTATFDRENGGGFLTDHFPCATKAIWYFEGIYAYSPHITGVRFPGLTSP 531
            P VV  +D  K   +Q +  HNRWHP+IP  A VK G  FR+E  +WT G I +NDSA DV+ +DL+  H LSGPIKV       A+PGDLL V+I ++GP+P       G+ WGY+  F + NGGGFLTD++P A KAIW F G    S H+ GVR+ G+T P
Sbjct:    2 PEVVFSVDHSKSMRDQAVPGHNRWHPDIPAAATVKPGSEFRIECKEWTDGQIGNNDSANDVRDVDLAPCHMLSGPIKVEG-----AEPGDLLIVDILDIGPVPQTNGPNCGEGWGYSGIFAKVNGGGFLTDYYPDAYKAIWDFHGQQCTSRHVPGVRYTGITHP 160          
The following BLAST results are available for this feature:
BLAST of EY665945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FMDA_METME4.118e-4353.25Formamidase OS=Methylophilus methylotrophus GN=fmd... [more]
FMDA_SCHPO3.854e-4150.96Putative formamidase C869.04 OS=Schizosaccharomyce... [more]
AMDA_MYCSM1.050e-3849.39Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-007-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665945 ID=EY665945; Name=EY665945; organism=Citrus sinensis; type=EST; length=872bp
ACCCCGCGTCCGCTTGAAACTCTCTGAATCTTCACAGATTCATCCATGGC
TCCAACAACCCCAACGGTGGTAGTGCCAATAGACTTGAAGAAGAAACCAA
ATGAGCAAAAGCTAACCCTTCACAACAGATGGCACCCGGAGATACCTCCG
GTGGCAGAAGTTAAAGTTGGCGAGCTTTTCAGAGTAGAGATGGTAGATTG
GACGGGGGGTGCGATAAAAGATAATGATTCTGCAATTGATGTGAAAACCT
TAGACCTCTCCACTGTGCATTATCTCAGCGGACCGATCAAAGTTGTGGAT
GAACAAGGAATTCCAGCGAAGCCAGGTGATCTTCTTGCAGTTGAAATATG
CAACTTGGGTCCTCTGCCTGGAGATGAATGGGGTTATACAGCAACATTTG
ATAGAGAAAATGGAGGTGGTTTTTTGACTGATCATTTCCCTTGTGCAACC
AAAGCTATTTGGTACTTTGAAGGAATTTATGCCTACTCTCCTCACATAAC
GGGGGTACGATTTCCAGGTTTAACTTCACCCTGGCATAATTGGGAACTGC
GCCATCAATGGGAACCTCCTGAAAGATATGGAAATGAAAGGGAAAAGAGA
ACTTGAAAAAACTGGTCTTCAATCCCTCAAATTTATGTGAGGTCTTTGCA
TACGCGAACATTGGCAAAATTACCATTGACCGAAGGTTGGTTGCTTTGGA
AAAATCCAGAAAGGAACTCCTGAATGGGAAAAAAATTGTTATGGAGGCTG
GAAGGGACATTCCCGGAAAAAAAAATGGAGGAAATTGTGAACTCCAAAAA
TCTAACCACAAGGGTTCAAAATATCCCTTCCAGAATTCCCGGGTGGGGGC
CAAATTTTATTTACCGGGGAAA
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