CK938513

Overview
NameCK938513
Unique NameCK938513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938513_ssr54 microsatellite CK938513_ssr54:54..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10456 contig Csv1_Contig10456:81..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938513 vs. ExPASy Swiss-Prot
Match: GILT_HUMAN (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.920e-21
Identity = 67/189 (35.45%), Postives = 100/189 (52.91%), Query Frame = 2
Query:  173 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR--ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLE--LDPKPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVEGQPLYEDYENFISYVCKAYKG---NVVPNACSNL 718
            V + LYYE+LC     F+I  L   +  + ++ I+++ L P+GNA+ +  +    F CQHG  EC  N VEAC +D   ++   F  I C+E   +E        C       L P  I++C     G QL    A  T++L PPH+YVPWV V G+PL ED    ++ VC+ Y+G   +V P++ S+L
Sbjct:   73 VNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHGEEECKFNKVEACVLDEL-DMELAFLTIVCMEE--FEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVCQLYQGKKPDVCPSSTSSL 255          
BLAST of CK938513 vs. ExPASy Swiss-Prot
Match: YVRI_CAEEL (GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.551e-18
Identity = 60/185 (32.43%), Postives = 100/185 (54.05%), Query Frame = 2
Query:  164 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCI-ESLVYEHKYSQ-WETCFDKLELD---PKPIVDCYTSGYGTQLELKYAAETNSLVP-PHQYVPWVVVEGQPL--YEDYENFI-SYVCKAYKGN 691
            N K+ + +  E+LCP   NF+   L  I    +  + V++ L P+GNAK+   + T  CQHG  EC +N  E C IDS  +     P + CI ESL  + +++   + CF+KL++     +    C  S  G  L+ K AA T ++ P  H++VPWV++ G  L  ++ ++N + + +C+ Y G+
Sbjct:   73 NQKINITVLIEALCPDCQNFLTKQLYPIVFK-NFANYVNIELVPFGNAKV-LEDGTIKCQHGEEECSINKFEGCFIDSMQD-QSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQRLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSLTSFQGFQNQLPTLLCEWYSGD 254          
BLAST of CK938513 vs. ExPASy Swiss-Prot
Match: YKJ2_CAEEL (GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.090e-16
Identity = 56/205 (27.32%), Postives = 101/205 (49.27%), Query Frame = 2
Query:  116 FLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFD--CQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDP---KPIVDCYTSGYGTQLELKYAAETNSLVPPHQYVPWVVVEGQPLYEDYENFISYVCKAYKGNVVPNACSN 715
            F+     A  T    V + VKL +Y E+ CP ++ F    L K ++ +  L+ ++L++ P+G A+     + F+  CQHGP+EC +N +  C ID +   +++ P + C++      KYS  E      E  P   + + +C +   G +L      +T SL P   ++PW+V+ G    +   +    VC+A +   +P+AC +
Sbjct:  120 FIEYEPKAGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQG-----KYSLDEAMKCVTENYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSRNSDALYDLTQNVCEAMQ--PMPSACKD 317          
The following BLAST results are available for this feature:
BLAST of CK938513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GILT_HUMAN1.920e-2135.45Gamma-interferon-inducible lysosomal thiol reducta... [more]
YVRI_CAEEL7.551e-1832.43GILT-like protein F37H8.5 OS=Caenorhabditis elegan... [more]
YKJ2_CAEEL1.090e-1627.32GILT-like protein C02D5.2 OS=Caenorhabditis elegan... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004441_G04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938513 ID=CK938513; Name=CK938513; organism=Citrus sinensis; type=EST; length=854bp
GGGGAAGAAGAAAGGGGAAAAAAAATAGCCCTAATTTACGGATTCATCTA
TGGCTTCTTCTTCTTCTTCCTCAAAAAAAGCCTTATCTCTTGTCTTTTAC
ATTACCTTGTTCTGCTTCTTGTCTGGCTCTGTTTCAGCTTCTAGAACTTC
ACCTTCAGATGTTAACAGTAAAGTCAAGTTAGGTCTGTACTACGAGTCTT
TGTGTCCATACAGTGCCAATTTCATTATCAATTACTTGGTTAAAATCTTT
GAAGATGTTGATCTGTTATCCATCGTTGATCTCCATCTTTCTCCCTGGGG
GAACGCCAAAATCAGAGCCAACAACAGCACCTTTGATTGCCAGCATGGCC
CTTCTGAATGCTTGCTGAACACTGTGGAAGCTTGTGCGATTGATAGTTGG
CCTGAATTGAACAAGCATTTCCCGTTTATCTACTGCATTGAGAGTTTAGT
GTACGAGCATAAGTATTCTCAGTGGGAAACATGCTTTGATAAATTGGAAC
TGGATCCGAAACCAATTGTTGATTGCTATACCAGTGGATATGGAACACAG
CTTGAGTTAAAATATGCAGCTGAGACAAATTCCCTTGTGCCTCCTCATCA
ATATGTGCCTTGGGTTGTTGTGGAAGGACAGCCACTGTATGAGGACTACG
AAAATTTTATAAGCTATGTCTGCAAGGCTTATAAAGGCAATGTCGTGCCT
AACGCTTGCAGCAACCTATTCCTCATCACGAACTNNNATGGAGTCGAACA
AAAGCCTGTCTTTCCAGTTGGCTATAATAAGTAGATAACAACATTACCCA
CAAGAATTAAATCAGCCATAACAATGTGGATACGCAAGATGAGCATGGTA
GCTT
back to top