FC921791

Overview
NameFC921791
Unique NameFC921791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length270
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: COMT1_POPTM (Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.781e-28
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 2
Query:    2 LDLLQVIAKAGPGAFMSPKPIASPLPPKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNE 235
            LDLL+++AKAGPGAF+S   IAS LP KN DA ++LDRILRLLASYS+L CSL  LPDG VERLYGLAPVCKFLTKNE
Sbjct:   42 LDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNE 119          
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: COMT1_POPKI (Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.781e-28
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 2
Query:    2 LDLLQVIAKAGPGAFMSPKPIASPLPPKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNE 235
            LDLL+++AKAGPGAF+S   IAS LP KN DA ++LDRILRLLASYS+L CSL  LPDG VERLYGLAPVCKFLTKNE
Sbjct:   42 LDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNE 119          
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: COMT1_CATRO (Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.366e-27
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 2
Query:    2 LDLLQVIAKAGPGAFMSPKPIASPLPPKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNE 235
            LDLL++I K+GPGA++SP  +A+ LP +N DA ++LDRILRLLASYSVLNC+L  LPDGG+ERLY LAPVCKFLTKNE
Sbjct:   42 LDLLELIKKSGPGAYVSPSELAAQLPTQNPDAPVMLDRILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFLTKNE 119          
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: COMT3_POPKI (Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.741e-27
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 2
Query:    2 LDLLQVIAKAGPGAFMSPKPIASPLPPKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNE 235
            LDLL+++AKAGPGA +SP  IAS LP KN DA ++LDRILRLLASYS+L CSL  LPDG VERLYGLA VCKFLTKNE
Sbjct:   41 LDLLEIMAKAGPGALLSPSDIASHLPTKNPDAPVMLDRILRLLASYSILICSLRDLPDGKVERLYGLASVCKFLTKNE 118          
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: COMT1_ROSCH (Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.741e-27
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 2
Query:    2 LDLLQVIAKAGPGAFMSPKPIASPLPPKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNE 235
            LDLL+++AKAGPGAF+SP  +AS LP KN +A ++LDR+LRLLASYS+L  SL TLPDG VERLYGL PVCKFLTKNE
Sbjct:   42 LDLLEIMAKAGPGAFLSPNDLASQLPTKNPEAPVMLDRMLRLLASYSILTYSLRTLPDGKVERLYGLGPVCKFLTKNE 119          
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: COMT1_OCIBA (Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.741e-27
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = 2
Query:    2 LDLLQVIAKAGPGAFMSPKPIASPLPPKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNE 235
            LDLL++I K+G GAF+SP  +A+ LP  N DAH++LDRILRLL SY++L C L TLPDGGVERLYGLAPVCKFLTKNE
Sbjct:   40 LDLLELIKKSGAGAFVSPVDLAAQLPTTNPDAHVMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNE 117          
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGU (Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.849e-26
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 2
Query:    2 LDLLQVIAKAGPGAFMSPKPIASPLPPKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNE 235
            LDLL+++AKAGPGAF+SP  +A+ LP +N +A ++LDRI RLLASYSVL C+L  LPDG VERLYGLAPVCKFL KNE
Sbjct:   43 LDLLEIMAKAGPGAFLSPGEVAAQLPTQNPEAPVMLDRIFRLLASYSVLTCTLRNLPDGKVERLYGLAPVCKFLVKNE 120          
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: COMT1_CAPCH (Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.849e-26
Identity = 54/77 (70.13%), Postives = 67/77 (87.01%), Query Frame = 2
Query:    2 LDLLQVIAKAGPGAFMSPKPIASPLPPKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKN 232
            LDLL+++AK+GPGAF+SP  +A+ LP KN +A ++LDR+ RLLA+YSVLNC+L TLPDG VERLY LAPVCKFLTKN
Sbjct:   38 LDLLEIMAKSGPGAFISPSELAAQLPTKNPEAPVMLDRMFRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKFLTKN 114          
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: COMT1_PRUDU (Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.721e-26
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 2
Query:    2 LDLLQVIAKAGPGAFMSPKPIASPLPPKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKNE 235
            LDLL+++AKAGPG F+SP  IAS LP KN DA ++LDR+LRLLASYS+L  SL TL DG VERLYGL PVCKFLTKNE
Sbjct:   42 LDLLEIMAKAGPGVFLSPTDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNE 119          
BLAST of FC921791 vs. ExPASy Swiss-Prot
Match: COMT1_COFCA (Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.721e-26
Identity = 56/77 (72.73%), Postives = 67/77 (87.01%), Query Frame = 2
Query:    2 LDLLQVIAKAGPGAFMSPKPIASPLPPKNSDAHILLDRILRLLASYSVLNCSLHTLPDGGVERLYGLAPVCKFLTKN 232
            LDLL++IAKAGPGA++SP  +A+ LP  N +A I+LDRILRLLA+YSVL+C L+ L DGGVERLYGLAPVCKFLTKN
Sbjct:   29 LDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPIMLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKN 105          
The following BLAST results are available for this feature:
BLAST of FC921791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
COMT1_POPTM6.781e-2876.92Caffeic acid 3-O-methyltransferase 1 OS=Populus tr... [more]
COMT1_POPKI6.781e-2876.92Caffeic acid 3-O-methyltransferase 1 OS=Populus ki... [more]
COMT1_CATRO3.366e-2771.79Caffeic acid 3-O-methyltransferase OS=Catharanthus... [more]
COMT3_POPKI5.741e-2775.64Caffeic acid 3-O-methyltransferase 3 OS=Populus ki... [more]
COMT1_ROSCH5.741e-2773.08Caffeic acid 3-O-methyltransferase OS=Rosa chinens... [more]
COMT1_OCIBA5.741e-2771.79Caffeic acid 3-O-methyltransferase 1 OS=Ocimum bas... [more]
COMT1_EUCGU2.849e-2670.51Caffeic acid 3-O-methyltransferase OS=Eucalyptus g... [more]
COMT1_CAPCH2.849e-2670.13Caffeic acid 3-O-methyltransferase OS=Capsicum chi... [more]
COMT1_PRUDU3.721e-2673.08Caffeic acid 3-O-methyltransferase OS=Prunus dulci... [more]
COMT1_COFCA3.721e-2672.73Caffeic acid 3-O-methyltransferase OS=Coffea canep... [more]

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Properties
Property NameValue
Genbank descriptionC06052D07T7 RindPdigS Citrus sinensis cDNA clone C06052D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921791 ID=FC921791; Name=FC921791; organism=Citrus sinensis; type=EST; length=270bp
GCTTGATCTTTTACAGGTCATTGCTAAAGCTGGCCCCGGTGCTTTCATGT
CTCCCAAACCAATAGCTTCCCCGCTGCCCCCAAAGAACTCAGATGCCCAT
ATCCTGCTCGATCGCATATTGCGTCTTTTAGCTAGCTACTCAGTTCTTAA
CTGCTCTTTGCACACTCTCCCTGATGGCGGAGTTGAGAGGCTTTATGGCC
TTGCACCCGTCTGTAAATTCCTTACCAAAAATGAATTATTTTTTTTCACT
TTCCGACATTTGTCTCCTGT
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