CK938508

Overview
NameCK938508
Unique NameCK938508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938508_ssr30 microsatellite CK938508_ssr30:30..43. BLAST: Citrus ESTs to Prunus persica proteins V1
CK938508_ssr238 microsatellite CK938508_ssr238:238..252. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2487 contig Csv1_Contig2487:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK938508 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.602e-18
Identity = 66/197 (33.50%), Postives = 83/197 (42.13%), Query Frame = 3 
Query:   90 EKKKFTTMALEALNSPTTSTHNHHPFRYEDSWTKRRRSKRLRTDESPQLXXXXXXXTEEEYMALCLIMLARGTTTANTAPAERTPTLAPEQKPLDQFPEPPSLKLSYKCSVCNKAFSSYQALGGHKASHR------------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKSFPTGQALGGHKR 644
            E+ +    A  A++S T+   + H  +    W KR+RS+R R+              EEE +ALCL+ML+RG      AP              + F  P  +   +KCSVC K+FSSYQALGGHK SHR                                              H CSIC K FPTGQALGGHKR
Sbjct:   15 EQHQLDVEAAAAVSSATSGEESGHVLQ---GWAKRKRSRRQRS--------------EEENLALCLLMLSRGGKQRVQAPQP------------ESFAAP--VPAEFKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKR 180
The following BLAST results are available for this feature:
BLAST of CK938508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT1.602e-1833.50Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004441_H07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938508 ID=CK938508; Name=CK938508; organism=Citrus sinensis; type=EST; length=646bp
GGGGATCATTTCCATCCATTTGAAATCACCTCTCTCTCTCTCTCGAAACT
CAACAGATTCAACCACAAGAGTCGAGAATTCACTAACAAGAAAAGAAAAA
ATTCACGACTATGGCTCTAGAAGCTCTAAACTCCCCTACAACAAGCACCC
ACAATCATCATCCGTTTAGATACGAAGACTCATGGACTAAAAGAAGGCGC
TCAAAACGACTCCGTACCGACGAGTCCCCACAACTACCAGCAGCAGCAGC
AGCTCCCACGGAAGAAGAGTACATGGCTCTCTGTCTCATCATGCTCGCCC
GCGGTACCACCACCGCCAACACCGCTCCGGCCGAAAGAACCCCAACCCTG
GCGCCGGAACAGAAGCCGCTGGATCAGTTCCCGGAGCCGCCAAGTTTGAA
ACTCTCTTACAAGTGCAGTGTGTGCAACAAGGCTTTCTCTTCGTACCAGG
CCCTTGGTGGGCACAAAGCCAGCCACCGCAAGAACGCTGCTGACGCCTCG
GCTTCTCCCAACGCCGCAGCCGCCAGTGACGTCACCCCACCACCGTCGGC
AACGGCGAGCAGCGGAAGCGGTGGTAGGACCCACGAGTGCTCTATTTGTC
ACAAGTCTTTTCCCACGGGACAAGCTCTAGGAGGCCACAAGCGGTG
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