CK938490

Overview
NameCK938490
Unique NameCK938490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length344
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1163..1506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPE1_SOYBN (Arginine decarboxylase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.518e-45
Identity = 89/113 (78.76%), Postives = 94/113 (83.19%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAEEYCGQEH 343
            TCDS  KIDKFI G  SLPLHEM GG       YYLGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGPH FAVTRA+PGPSCGDVL VMQH+PELMFETLKHRA+EY   ++
Sbjct:  539 TCDSDGKIDKFINGESSLPLHEMEGGRT-----YYLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAVPGPSCGDVLRVMQHQPELMFETLKHRAQEYVSHDN 646          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPE1_PEA (Arginine decarboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.837e-45
Identity = 89/111 (80.18%), Postives = 94/111 (84.68%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAEEYCGQ 337
            TCDS  KIDKFIGG  SLPLHEM G G    G YYLGMFLGG+YEEALGG+HNLFGGPSVVRVLQSDGPH FAVTRA+ G SC DVL VMQHEP+LMFETLKHRA E+CGQ
Sbjct:  551 TCDSDGKIDKFIGGESSLPLHEMEGHG----GGYYLGMFLGGSYEEALGGLHNLFGGPSVVRVLQSDGPHGFAVTRAVAGSSCADVLRVMQHEPQLMFETLKHRALEFCGQ 657          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPE1_ARATH (Arginine decarboxylase 1 OS=Arabidopsis thaliana GN=SPE1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.755e-42
Identity = 86/107 (80.37%), Postives = 89/107 (83.18%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAEE 325
            TCDS  KI+KFIGG  SLPLHEM   GC   G YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPH FAVTRA+ G S  DVL  MQHEPELMF+TLKHRAEE
Sbjct:  523 TCDSDGKINKFIGGESSLPLHEMDNNGCSG-GRYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHRAEE 628          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPE2_ARATH (Arginine decarboxylase 2 OS=Arabidopsis thaliana GN=SPE2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.082e-41
Identity = 84/107 (78.50%), Postives = 89/107 (83.18%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAEE 325
            TCDS  KI+KFIGG  SLPLHE+   G G  G Y+LGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGPH FAVTRA+PG S  DVL  MQHEPELMF+TLKHRAEE
Sbjct:  536 TCDSDGKINKFIGGESSLPLHELDKNGSG--GRYFLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHRAEE 640          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPE1_DIACA (Arginine decarboxylase OS=Dianthus caryophyllus GN=ADC PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.407e-40
Identity = 83/107 (77.57%), Postives = 87/107 (81.31%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAEE 325
            TCDS  KIDKFIG   SLPLHE+ GG       YYLGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGP  +AVTRA+PGPS  DVL VM HEPELMF+TLKHRAEE
Sbjct:  548 TCDSDGKIDKFIGDESSLPLHELSGGE-----GYYLGMFLGGAYEEALGGVHNLFGGPSVVRVQQSDGPQSYAVTRAVPGPSSSDVLRVMHHEPELMFQTLKHRAEE 649          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPE1_BRAJU (Arginine decarboxylase OS=Brassica juncea GN=ADC1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.591e-40
Identity = 83/107 (77.57%), Postives = 86/107 (80.37%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAEE 325
            TCDS  KI+KFIGG  SLPLHE+   G      YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQ DGPH FAVTRAM G S  DVL  MQHEPELMF+TLKHRAEE
Sbjct:  529 TCDSDGKINKFIGGESSLPLHELDNNG------YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQKDGPHGFAVTRAMMGQSSADVLRAMQHEPELMFQTLKHRAEE 629          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPE1_ORYSJ (Arginine decarboxylase OS=Oryza sativa subsp. japonica GN=ADC1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.526e-37
Identity = 78/106 (73.58%), Postives = 84/106 (79.25%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAE 322
            TCDS  K+D FIGG  SLPLHE+   G   RG YYLGMFLGGAY+EALGG+HNLFGGPSVVRV QSDGPH FAVTRA  GPSC DVL  MQHEPE+MFE LK R +
Sbjct:  539 TCDSDGKVDHFIGGRHSLPLHELPVHGT--RG-YYLGMFLGGAYQEALGGLHNLFGGPSVVRVSQSDGPHCFAVTRAAAGPSCADVLRSMQHEPEVMFEVLKQRTD 641          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPE1_SOLLC (Arginine decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.239e-26
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFA 223
            TCDS  K+DKFIGG  SLPLHE+   G G+ G YYLGMFLGGAYEEALGG+HNLFGGPSVVRV+QSD PH FA
Sbjct:  433 TCDSDGKVDKFIGGESSLPLHEI---GSGDGGRYYLGMFLGGAYEEALGGLHNLFGGPSVVRVMQSDSPHSFA 502          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPEA_SYNR3 (Biosynthetic arginine decarboxylase OS=Synechococcus sp. (strain RCC307) GN=speA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.644e-16
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV-LQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAEEYCG 334
            TCDS  K+ +FI    + PL E+     GE  PY++G+FLGGAY+E +G +HNLFG  + V + L   GP  + V   + G +  DVL  M+H PE + E L+  +EE  G
Sbjct:  506 TCDSDGKLARFIASGSAKPLLELHELKDGE--PYWIGLFLGGAYQEVMGNLHNLFGSTNAVSIRLSPGGP--YRVEHVVRGQTNSDVLEAMEHNPEALLERLRQASEEAIG 612          
BLAST of CK938490 vs. ExPASy Swiss-Prot
Match: SPEA_SYNPX (Biosynthetic arginine decarboxylase OS=Synechococcus sp. (strain WH8102) GN=speA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.478e-14
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 2
Query:    5 TCDSAFKIDKFIGGXXS---LPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHIFAVTRAMPGPSCGDVLWVMQHEPELMFETLKHRAE 322
            TCDS  ++D+FIG       L LHE+      +  PY +G+FL GAY+E +G +HNLFG  + V +  S G   + +   + G +  DVL  M+H+P ++ E L+  AE
Sbjct:  510 TCDSDGRLDRFIGDGQPKQLLELHEL-----DDNNPYLIGLFLSGAYQEVMGNLHNLFGTTNAVHIRLSPGGS-YRIDHVVRGDTNADVLEAMEHDPRVLLERLRVAAE 612          
The following BLAST results are available for this feature:
BLAST of CK938490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
SPE1_SOYBN3.518e-4578.76Arginine decarboxylase OS=Glycine max PE=2 SV=1[more]
SPE1_PEA7.837e-4580.18Arginine decarboxylase OS=Pisum sativum PE=2 SV=1[more]
SPE1_ARATH4.755e-4280.37Arginine decarboxylase 1 OS=Arabidopsis thaliana G... [more]
SPE2_ARATH3.082e-4178.50Arginine decarboxylase 2 OS=Arabidopsis thaliana G... [more]
SPE1_DIACA3.407e-4077.57Arginine decarboxylase OS=Dianthus caryophyllus GN... [more]
SPE1_BRAJU7.591e-4077.57Arginine decarboxylase OS=Brassica juncea GN=ADC1 ... [more]
SPE1_ORYSJ3.526e-3773.58Arginine decarboxylase OS=Oryza sativa subsp. japo... [more]
SPE1_SOLLC6.239e-2676.71Arginine decarboxylase OS=Solanum lycopersicum PE=... [more]
SPEA_SYNR37.644e-1641.44Biosynthetic arginine decarboxylase OS=Synechococc... [more]
SPEA_SYNPX5.478e-1437.61Biosynthetic arginine decarboxylase OS=Synechococc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_C03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938490 ID=CK938490; Name=CK938490; organism=Citrus sinensis; type=EST; length=344bp
GGGGACTTGTGATAGCGCTTTTAAGATTGATAAGTTCATTGGTGGNNNNA
NGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAGCGTGGG
CCTTATTATTTGGGGATGTTCTTGGGCGGGGCTTATGAGGAGGCCCTCGG
TGGAGTCCACAACTTGTTTGGTGGTCCAAGCGTGGTACGCGTCTTGCAGA
GTGATGGTCCGCACATCTTTGCTGTGACTCGGGCCATGCCTGGGCCGTCT
TGTGGGGATGTCCTCTGGGTGATGCAGCACGAGCCCGAGCTCATGTTTGA
GACCCTCAAACACCGTGCTGAGGAATATTGTGGACAGGAGCATG
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