CK938488

Overview
NameCK938488
Unique NameCK938488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2031 contig Csv1_Contig2031:780..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL3_BOVIN (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus GN=UCHL3 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 1
Query:    7 NVYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 435
            +VY MKQT+ NACGTIGL+HA+ N   ++ F++ S   KF + +A++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDGRK  PI+HG            +V K  ++++P+ L FN IA S
Sbjct:   83 SVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESASMSPEERARYLENYDAIRVTHETSAHEGQTEAPNIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALS 228          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL3_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Mus musculus GN=Uchl3 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.142e-28
Identity = 64/146 (43.84%), Postives = 88/146 (60.27%), Query Frame = 1
Query:    7 NVYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 435
            +VY MKQT+ NACGTIGL+HA+ N   ++ F++ S   KF + + ++ P+ERA FLEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDGRK  PI+HG            +V K  ++++P+ L FN IA S
Sbjct:   83 SVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERAKFLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGKTSDETLLEDAIEVCKKFMERDPDELRFNAIALS 228          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL3_HUMAN (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Homo sapiens GN=UCHL3 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 63/146 (43.15%), Postives = 88/146 (60.27%), Query Frame = 1
Query:    7 NVYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 435
            +VY MKQT+ NACGTIGL+HA+ N   ++ F++ S   KF + + ++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDGRK  PI+HG            +V K  ++++P+ L FN IA S
Sbjct:   83 SVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALS 228          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL3_PIG (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Sus scrofa GN=UCHL3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 63/146 (43.15%), Postives = 89/146 (60.96%), Query Frame = 1
Query:    7 NVYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 435
            +VY MKQT+ NACGTIGL+HA+ N  +++ F++ S   KF + +A++ P ERA +LE+   + V H  +A  G TEA    + V+ HFI    VDG LYELDGRK  PI+HG            +V K  ++++P+ L FN IA S
Sbjct:   83 SVYFMKQTISNACGTIGLIHAIANNKNKMHFESGSTLKKFLEESASMSPDERARYLESYDAIPVTHETSAHEGQTEAPNIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALS 228          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL3_RAT (Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Rattus norvegicus GN=Uchl3 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.093e-27
Identity = 63/146 (43.15%), Postives = 86/146 (58.90%), Query Frame = 1
Query:    7 NVYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 435
            +VY MKQT+ NACGTIGL+HA+ N   ++ F++ S   KF + +  + P+ERA  LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDGRK  PI+HG            +V K  ++++P+ L FN IA S
Sbjct:   83 SVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSALKKFLEESVAMSPEERARHLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGKTSDETLLEDAIEVCKKFMERDPDELRFNAIALS 228          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL4_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L4 OS=Mus musculus GN=Uchl4 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = 1
Query:    7 NVYSMKQTVGNACGTIG---LLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 435
            +VY MKQT+ NACGTIG   L+HA+ N   ++ F++ S   KF + + ++ P+ERA +LEN   + V H  +A  G TEA    + V+ HFI    VDG LYELDG K  PI+HG            KV K  ++++P+ L FN IA S
Sbjct:   83 SVYFMKQTISNACGTIGTIGLIHAIANNKDKVHFESGSTLKKFLEESVSMSPEERAKYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGWKPFPINHGKTSDETLLEDVIKVCKKFMERDPDELRFNAIALS 231          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL1_PIG (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Sus scrofa GN=UCHL1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   10 VYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 444
            VY MKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDGR   P++HG            KV +   ++    + F+ +A  K A
Sbjct:   79 VYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDSLLQDAAKVCREFTEREQGEVRFSAVALCKAA 223          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL1_HORSE (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Equus caballus GN=UCHL1 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   10 VYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 444
            VY MKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDGR   P++HG            KV +   ++    + F+ +A  K A
Sbjct:   79 VYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDLLLQDAAKVCREFTEREQGEVRFSAVALCKAA 223          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL1_BOVIN (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Bos taurus GN=UCHL1 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   10 VYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 444
            VY MKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDGR   P++HG            KV +   ++    + F+ +A  K A
Sbjct:  108 VYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGTSSEDSLLQDAAKVCREFTEREQGEVRFSAVALCKAA 252          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL1_RAT (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Rattus norvegicus GN=Uchl1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.697e-25
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   10 VYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 444
            VY MKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDGR   P++HG            KV +   ++    + F+ +A  K A
Sbjct:   79 VYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDSLLQDAAKVCREFTEREQGEVRFSAVALCKAA 223          
The following BLAST results are available for this feature:
BLAST of CK938488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
UCHL3_BOVIN1.640e-2843.84Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_MOUSE2.142e-2843.84Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_HUMAN4.772e-2843.15Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_PIG1.063e-2743.15Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL3_RAT3.093e-2743.15Ubiquitin carboxyl-terminal hydrolase isozyme L3 O... [more]
UCHL4_MOUSE3.420e-2642.28Ubiquitin carboxyl-terminal hydrolase isozyme L4 O... [more]
UCHL1_PIG9.951e-2639.31Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_HORSE9.951e-2639.31Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_BOVIN9.951e-2639.31Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_RAT1.697e-2539.31Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_C01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938488 ID=CK938488; Name=CK938488; organism=Citrus sinensis; type=EST; length=729bp
GGGAAGAATGTTTATTCCATGAAGCAAACTGTTGGAAATGCTTGTGGAAC
AATTGGACTTCTTCATGCTGTTGGGAACGTCACTTCGGAAATCAAGTTTC
AAGCTGATTCATTCTTCGATAAATTTTACAAGTCCACAGCGAACTTGGAT
CCACAAGAGCGTGCAGCATTTCTTGAGAATGATAAGGAAATGGAAGTTGC
TCATTCGGTAGCAGCTTCAGCTGGTGACACAGAGGCTACCGATGACGTGA
ATGATCATTTTATCTGCTTCACCTGTGTGGATGGGGAACTTTATGAACTT
GATGGAAGGAAGTCGGGGCCAATATCTCATGGTGCTTCGTCTCCAAGCAG
CTTATTGTTGGATGCAGCTAAAGTGATAAAGGGCATGATCCAGAAAAATC
CTGAATCACTGAACTTCAATGTAATTGCCTTTTCGAAGAAAGCTTGAGGT
GCATTTTAATGTTGAGAATCTGAGCTTATTAAGTTCCTGCAAATGATAAA
GCTTCTTACTGCGGTTTTCAGTTTGTGCACATCCACATATGCTGCAGACA
AACTAGTTCAGTGATGGTTGTAGGTCGACTTAGGTGGCTTTACTTTCAGA
TGGTACAGCATGTTAATTCTGGTTGCTATGTTTCAGTTTTAGAGCAGATT
CATTTTACACCTTGGGAGTGCCAGCATGACTCTTAGCCCTACAATGCAAG
TTATGCTACATTTCCTGCTGATGTTAAAT
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