CK938463

Overview
NameCK938463
Unique NameCK938463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938463 vs. ExPASy Swiss-Prot
Match: SOSSB_DICDI (SOSS complex subunit B homolog OS=Dictyostelium discoideum GN=DDB_G0279223 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 51/125 (40.80%), Postives = 70/125 (56.00%), Query Frame = 2
Query:   35 VNMISLKDLSPAAQNNINTKFIVLDK-MKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPH--PNDSHN 400
            +N+I + ++ P ++N IN  FIVLDK   T   EG       LVAD TA+++   W    +  +PGDILRL  G  +   + L L  GK G ++KIGE+T  FVE PN+S   W  H  PN+  N
Sbjct:    1 MNLIKVNEIKPYSKN-INCVFIVLDKGPPTKKKEGT--IYQVLVADSTASINMTVWDALGEQIQPGDILRLKGGYSNIYIELLNLYVGKTGIIEKIGEFTFPFVEAPNLSSTLWNVHQDPNNPKN 122          
BLAST of CK938463 vs. ExPASy Swiss-Prot
Match: SOSB1_RAT (SOSS complex subunit B1 OS=Rattus norvegicus GN=Obfc2b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 43/124 (34.68%), Postives = 67/124 (54.03%), Query Frame = 2
Query:   50 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPNDSHNKYVQESA 421
            +KD+ P  +N +N  FIVL+  +    +  ++     VAD+T +++   W D  +  +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE     +   + NK VQ  +
Sbjct:    7 VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYNTQQASNKSVQNDS 129          
BLAST of CK938463 vs. ExPASy Swiss-Prot
Match: SOSB1_HUMAN (SOSS complex subunit B1 OS=Homo sapiens GN=OBFC2B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 45/130 (34.62%), Postives = 69/130 (53.08%), Query Frame = 2
Query:   50 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPNDSHNKYVQESAISSHSR 439
            +KD+ P  +N +N  FIVL+  +    +  ++     VAD+T +++   W D  +  +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE         + NK VQ  +  S S+
Sbjct:    7 VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQ 135          
BLAST of CK938463 vs. ExPASy Swiss-Prot
Match: SOSB1_MOUSE (SOSS complex subunit B1 OS=Mus musculus GN=Obfc2b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 2
Query:   50 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPNDSHNKYVQES 418
            +KD+ P  +N +N  FIVL+  +    +  ++     VAD+T +++   W D  +  +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE     +   + NK VQ +
Sbjct:    7 VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYNTQQAPNKSVQNN 128          
BLAST of CK938463 vs. ExPASy Swiss-Prot
Match: SOSB1_BOVIN (SOSS complex subunit B1 OS=Bos taurus GN=OBFC2B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 2
Query:   50 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPNDSHNKYVQESA 421
            +KD+ P  +N +N  FIVL+  +    +  ++     VAD+T +++   W D  +  +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE         + NK VQ  +
Sbjct:    7 VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSAQQAPNKTVQNDS 129          
BLAST of CK938463 vs. ExPASy Swiss-Prot
Match: SOSB1_XENTR (SOSS complex subunit B1 OS=Xenopus tropicalis GN=obfc2b PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.740e-14
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 2
Query:   50 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHP----NDSHNKYVQE---SAISSHSRIFPPMP 457
            +KD+ P  +N ++  FIVL+  +    +  ++     VAD+T +++   W D  +  +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE    P+P      S NK  Q    +  +SH+   P  P
Sbjct:    7 VKDVKPGLKN-LSVLFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDLGNFIQPGDIIRLTKGYASLFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE----PNPEYIAQQSQNKQAQAESGTGTNSHNSSSPAPP 144          
BLAST of CK938463 vs. ExPASy Swiss-Prot
Match: SOSSB_DROME (SOSS complex subunit B homolog OS=Drosophila melanogaster GN=CG5181 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.776e-13
Identity = 45/110 (40.91%), Postives = 57/110 (51.82%), Query Frame = 2
Query:   35 VNMISLKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSE 364
            V  I +KD+ P  +N IN  FIVL+       +   +     V D TA ++   W +      PGDI+RLT G  S  R  L L +GK G V KIGEY M F E+ NMSE
Sbjct:    4 VECIPIKDIKPGLKN-INVIFIVLEVGVATVTKENREVRNFKVGDPTACINVSIWDEPGKLIAPGDIVRLTKGYASIWRHCLTLYSGKNGEVFKIGEYCMVFNESVNMSE 112          
BLAST of CK938463 vs. ExPASy Swiss-Prot
Match: SOB1B_XENLA (SOSS complex subunit B1-B OS=Xenopus laevis GN=obfc2b-B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.776e-13
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 2
Query:   50 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPNDSHNKYVQE---SAISSHSRIFPPMP 457
            +KD+ P  +N ++  FIVL+  +    +  ++     VAD+T  ++   W +  +  +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE         S NK  Q    +  ++H+   P  P
Sbjct:    7 VKDVKPGLKN-LSVLFIVLETGRVTKTKDGHEVRTCKVADKTGTINISVWDEVGNFIQPGDIIRLTKGYASLFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYTAQQSQNKQAQAESGTGTNNHNSSSPAPP 144          
BLAST of CK938463 vs. ExPASy Swiss-Prot
Match: SOSB2_HUMAN (SOSS complex subunit B2 OS=Homo sapiens GN=OBFC2A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.814e-13
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 2
Query:   41 MISLKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPN 388
            +I ++D+ P  +N +N  FIVL+  +    +  ++     VAD+T ++    W +     +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE    P+P+
Sbjct:    8 LIFIRDIKPGLKN-LNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSE----PNPD 118          
BLAST of CK938463 vs. ExPASy Swiss-Prot
Match: SOSB2_BOVIN (SOSS complex subunit B2 OS=Bos taurus GN=OBFC2A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.151e-12
Identity = 44/136 (32.35%), Postives = 71/136 (52.21%), Query Frame = 2
Query:   50 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPN-------DSHNKYVQESAISSHS 436
            +KD+ P  +N +N  FIVL+  +    +  ++     VAD+T ++    W +     +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE    P+P+        +HN+    S  +S++
Sbjct:   11 IKDIKPGLKN-LNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSELPNFSE----PNPDYRGQQNKGAHNEQKNNSMNNSNN 141          
The following BLAST results are available for this feature:
BLAST of CK938463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SOSSB_DICDI1.898e-1540.80SOSS complex subunit B homolog OS=Dictyostelium di... [more]
SOSB1_RAT9.417e-1534.68SOSS complex subunit B1 OS=Rattus norvegicus GN=Ob... [more]
SOSB1_HUMAN9.417e-1534.62SOSS complex subunit B1 OS=Homo sapiens GN=OBFC2B ... [more]
SOSB1_MOUSE1.230e-1434.96SOSS complex subunit B1 OS=Mus musculus GN=Obfc2b ... [more]
SOSB1_BOVIN2.098e-1434.68SOSS complex subunit B1 OS=Bos taurus GN=OBFC2B PE... [more]
SOSB1_XENTR2.740e-1433.57SOSS complex subunit B1 OS=Xenopus tropicalis GN=o... [more]
SOSSB_DROME1.776e-1340.91SOSS complex subunit B homolog OS=Drosophila melan... [more]
SOB1B_XENLA1.776e-1331.65SOSS complex subunit B1-B OS=Xenopus laevis GN=obf... [more]
SOSB2_HUMAN8.814e-1334.48SOSS complex subunit B2 OS=Homo sapiens GN=OBFC2A ... [more]
SOSB2_BOVIN1.151e-1232.35SOSS complex subunit B2 OS=Bos taurus GN=OBFC2A PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_D07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938463 ID=CK938463; Name=CK938463; organism=Citrus sinensis; type=EST; length=601bp
GGGCATGCGAAGCTGCAGGTAACAAAGGCTGGCCGTGAATATGATTTCTC
TGAAAGACTTATCACCAGCAGCTCAAAACAACATAAACACAAAGTTCATA
GTTCTCGACAAAATGAAGACCGCAGCAATGGAAGGGCAGAACAAGACCTG
CTTAGCGCTGGTGGCTGACGAAACGGCTGCCGTTCACTTCCAGTTCTGGC
AAGACGAGTGTGATGCATTTGAGCCTGGTGATATTTTACGCTTGACTAAT
GGCATATTTTCTTACGTCAGAAAAAGTCTCGTGCTGAGAGCAGGCAAGAG
AGGCAGCGTCCAGAAAATTGGAGAGTACACAATGGCATTTGTGGAGACGC
CAAACATGAGTGAGATTCGTTGGGTTCCTCATCCCAATGATTCCCACAAT
AAGTATGTGCAGGAATCTGCTATTTCTTCTCATTCGCGTATTTTCCCTCC
AATGCCTTGAATGTCATGTCATCATCAGTCCCTTTAATGATTCTTCTCAA
TTAAAAGTCAAAAAGAGTTTGATTGTACTTTCACTTCTATTTCTTTGAAT
CAATCAACATCTACTTAGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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