CK938453

Overview
NameCK938453
Unique NameCK938453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6351 contig Csv1_Contig6351:179..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938453 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.064e-39
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 1
Query:   10 GQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGML 258
            G  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG L
Sbjct:   16 GGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98          
BLAST of CK938453 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.951e-37
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1
Query:   19 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 252
            AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++NSIAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQTGG
Sbjct:   16 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93          
BLAST of CK938453 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.357e-22
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   22 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 252
            HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ FL DG R+R +QTP EL+MEDGD+I+A+L Q GG
Sbjct:   35 HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111          
BLAST of CK938453 vs. ExPASy Swiss-Prot
Match: SUMO3_XENTR (Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.971e-19
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   13 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 255
            ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CK938453 vs. ExPASy Swiss-Prot
Match: SUMO3_XENLA (Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.971e-19
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   13 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 255
            ++ HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CK938453 vs. ExPASy Swiss-Prot
Match: SUMO3_CHICK (Small ubiquitin-related modifier 3 OS=Gallus gallus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.553e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   13 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 255
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEADTPAQLEMEDEDTIDVFQQQTGGL 93          
BLAST of CK938453 vs. ExPASy Swiss-Prot
Match: SUMO3_HUMAN (Small ubiquitin-related modifier 3 OS=Homo sapiens GN=SUMO3 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.028e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   13 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 255
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CK938453 vs. ExPASy Swiss-Prot
Match: SUMO3_RAT (Small ubiquitin-related modifier 3 OS=Rattus norvegicus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.649e-18
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   13 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 252
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CK938453 vs. ExPASy Swiss-Prot
Match: SUMO3_MOUSE (Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.649e-18
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   13 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 252
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CK938453 vs. ExPASy Swiss-Prot
Match: SUMO3_DANRE (Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.649e-18
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   13 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 252
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
The following BLAST results are available for this feature:
BLAST of CK938453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_ORYSJ6.064e-3992.77Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
SMT3_ARATH1.951e-3794.87Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
PMT3_SCHPO1.357e-2262.34Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO3_XENTR6.971e-1955.56Small ubiquitin-related modifier 3 OS=Xenopus trop... [more]
SUMO3_XENLA6.971e-1955.56Small ubiquitin-related modifier 3 OS=Xenopus laev... [more]
SUMO3_CHICK1.553e-1854.32Small ubiquitin-related modifier 3 OS=Gallus gallu... [more]
SUMO3_HUMAN2.028e-1854.32Small ubiquitin-related modifier 3 OS=Homo sapiens... [more]
SUMO3_RAT2.649e-1855.00Small ubiquitin-related modifier 3 OS=Rattus norve... [more]
SUMO3_MOUSE2.649e-1855.00Small ubiquitin-related modifier 3 OS=Mus musculus... [more]
SUMO3_DANRE2.649e-1855.00Small ubiquitin-related modifier 3 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_E08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938453 ID=CK938453; Name=CK938453; organism=Citrus sinensis; type=EST; length=497bp
ATTACGGCCGGGCAATCGGCTCACATCAATCTCAAAGTCAAGGGCCAGGA
TGGGAATGAGGTTTTCTTCAGGATCAAACGAAGCACCCAACTAAAGAAGC
TTATGAATGCATACTGTGATAGACAATCTGTGGAGCTGAACTCAATTGCC
TTCTTGTTTGATGGCCGCCGTCTTCGAGGAGAGCAAACCCCTGATGAGCT
GGAAATGGAAGATGGTGATGAGATTGATGCCATGCTGCACCAAACCGGAG
GAATGCTGATGTTCTAATTATGTAATGCTCGTTTGAGAGCTTATTAGTAG
TATTAATGTAAAACTATTTATGGATGGATGTAAGTTATGCAGAGGCTCAA
GATTGTGTATTTGTGATCTACACCATTATGTTTGGATTACCTAAGTATGT
AGCTCTTTCTTCAAGAGCCCTGATCGTTGCGGTTTATATAGAAGCTAGAA
TTTAAATAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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