CX675497

Overview
NameCX675497
Unique NameCX675497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5504 contig Csv1_Contig5504:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA7_ARATH (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = -2
Query:  474 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSA--EKGMNSGADSSKGSTNGT 737
            EPV+VNAKQ  GILRRRQSRA+ E + KVIK+RKP LHESRH HA+RR RGCGGRFLN KK +++  +S+  EK   S   S+  +++GT
Sbjct:  100 EPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNLSAGKSAMAASSGT 189          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.972e-21
Identity = 56/87 (64.37%), Postives = 64/87 (73.56%), Query Frame = -2
Query:  480 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKKLNDNAA-NSAEKGMNSGADSSKGSTN 737
            EPV+VNAKQ + ILRRRQ+RAKAELEKK+IK+RKP LHESRHQHAMRR RG GGRF   KK N  A+   AE+  N     S  S+N
Sbjct:  166 EPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNTEASKRKAEEKSNGHVTQSPSSSN 250          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA5_ARATH (Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.364e-21
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = -2
Query:  450 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIV 737
            EP++VNAKQ   ILRRR+ RAK E + K+IK RKP LHESRH HA++RARG GGRFLNTKKL +++ +     M +G + S     G   + SS +
Sbjct:  178 EPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGSSSI 273          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA4_ARATH (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.787e-21
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = -2
Query:  480 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTN 737
            EPV+VNAKQ  GILRRRQSRAK E   + IKA+KP +HESRH HA+RR RGCGGRFLN KK  +N  +  E+   S  ++S+ S++
Sbjct:   98 EPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKK--ENGDHKEEEEATSDENTSEASSS 181          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.669e-20
Identity = 57/91 (62.64%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  468 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGS-TNGTGS 737
            EPVYVNAKQ  GILRRR++RAKAELE+KVI+ RKP LHESRH+HAMRRAR  GGRF   KK    A   A      G D  +GS TN +GS
Sbjct:  172 EPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF--AKKSEVEAGEDA-----GGRDRERGSATNSSGS 255          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA8_ARATH (Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.149e-19
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = -2
Query:  543 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKKLNDN 737
            EPV+VNAKQ   I+RRRQ RAK E + K+IKARKP LHESRH HA++R RG GGRFLNTKKL ++
Sbjct:  172 EPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQES 236          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA3_ARATH (Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.196e-18
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = -2
Query:  522 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEK 737
            +PV+VNAKQ   I+RRRQ RAK E + K+I+ARKP LHESRH HA++R RG GGRFLNTKKL   +  +A +
Sbjct:  179 DPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKLLQESEQAAAR 250          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA6_ARATH (Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.938e-18
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = -2
Query:  555 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFLNTKK 737
            EP++VNAKQ + ILRRR+ RAK E + K+IK RKP LHESRH HA++R RG GGRFLNTKK
Sbjct:  171 EPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKK 231          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA_DICDI (Nuclear transcription factor Y subunit alpha OS=Dictyostelium discoideum GN=nfyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.323e-17
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = -2
Query:  480 EPVYVNAKQNRGILRRRQSRAKAELEKKVIKARKPNLHESRHQHAMRRARGCGGRFL---NTKKLN-DNAANSAEKGMNSGADSSKGSTN 737
            EP+YVNAKQ   IL+RR +RAK E E K+ K RK   HESRHQHA+RR RGCGGRFL   +  KL+  NAAN+A    N  A S+  +T+
Sbjct:  229 EPLYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAIRRQRGCGGRFLTKADQAKLDAQNAANAAAAAANPNASSTSTTTS 318          
BLAST of CX675497 vs. ExPASy Swiss-Prot
Match: NFYA2_ARATH (Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = -2
Query:  441 VYVNAKQNRGILRRRQSRAKAE--LEKKVI--KARKPNLHESRHQHAMRRARGCGGRFLNTKKLN-DNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQE 731
            +YVN+KQ  GI+RRRQSRAKA   L++K +  + RKP +H SRH HA+RR RG GGRFLNTK  N +N+  +A+KG  S    S+     + S +S +V  E
Sbjct:  138 IYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSGTNAKKGDGSMQIQSQPKPQQSNSQNSEVVHPE 239          
The following BLAST results are available for this feature:
BLAST of CX675497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYA7_ARATH3.043e-2260.00Nuclear transcription factor Y subunit A-7 OS=Arab... [more]
NFYA9_ARATH1.972e-2164.37Nuclear transcription factor Y subunit A-9 OS=Arab... [more]
NFYA5_ARATH3.364e-2152.08Nuclear transcription factor Y subunit A-5 OS=Arab... [more]
NFYA4_ARATH9.787e-2158.14Nuclear transcription factor Y subunit A-4 OS=Arab... [more]
NFYA1_ARATH1.669e-2062.64Nuclear transcription factor Y subunit A-1 OS=Arab... [more]
NFYA8_ARATH3.149e-1969.23Nuclear transcription factor Y subunit A-8 OS=Arab... [more]
NFYA3_ARATH1.196e-1861.11Nuclear transcription factor Y subunit A-3 OS=Arab... [more]
NFYA6_ARATH5.938e-1868.85Nuclear transcription factor Y subunit A-6 OS=Arab... [more]
NFYA_DICDI1.323e-1755.56Nuclear transcription factor Y subunit alpha OS=Di... [more]
NFYA2_ARATH5.027e-1749.02Nuclear transcription factor Y subunit A-2 OS=Arab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62F06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F06-L12-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675497 ID=CX675497; Name=CX675497; organism=Citrus sinensis; type=EST; length=738bp
TTTTTTTACAGGAAAGGTGAATGGACGAGGCGTGGGACTAAAGGCAGAGC
AATGAAGATAACATTATATCTTCATCCCTGTATTCTTCTTCCTCATCTCA
CCCAAAGCCACCACAAGTTTGCAAAGCCAAGAATGAATTGCCTGAGGACC
ACCACACCAATGATGATTTCCCCATTCTGAAAAGAAGGGCATGTATACCT
CCCGCTTCGCCCGTTAGAGCAATCATGGAGTGCCCCTCCAACGTCAAGGA
ACTTTCACTTTCACTTAACGGGAAGGGCCCCTCGTGGTGCCCCATTCCCC
TGCATGCTTCCCCTCTGCTGTCCCAGGAAGTTCCCTTCCACACTTCCACT
AGATGTATTGTACATTGATAGCAGACTCCGGCCATTACTGTTACTATTGG
AGGAAGTGTGTTCCCTGTGCGCGTTCTCCTCCATTGCCCTCTCTTGCTGA
ACTATGGATGAATCCACAGATCCAGTACCATTGGTGGACCCCTTTGAACT
GTCTGCACCAGAATTCATACCTTTTTCTGCAGAGTTTGCAGCATTGTCAT
TGAGCTTCTTAGTATTGAGAAAACGGCCTCCACAACCCCTAGCCCTTCTC
ATTGCATGTTGATGTCTGGACTCATGAAGATTAGGCTTTCTCGCTTTAAT
CACTTTCTTTTCAAGCTCAGCCTTAGCACGCGACTGTCTTCGTCTCAAAA
TACCTCTGTTCTGTTTTGCATTCACATAAACCGGCTCC
back to top