EY665940

Overview
NameEY665940
Unique NameEY665940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 3.585e-82
Identity = 158/212 (74.53%), Postives = 169/212 (79.72%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNFY-GKAAQQNECSSSLNDVLDLTAQNFDPPARSG*G 702
            DNPT VQLPGMY  EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR W            LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN +AI+ G FY G+AAQQ           D  A N+DP ARS  G
Sbjct:  259 DNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDG 470          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 1.362e-81
Identity = 150/216 (69.44%), Postives = 173/216 (80.09%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNFYGKAAQQNECSSSLNDVLDLTAQNFDPPARSG*GKFAIT 717
            DNPT VQLPGMY  E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR W            LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN++A+++G+FYG+ AQQ           D  A+NFDP ARS  G    T
Sbjct:  250 DNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.569e-80
Identity = 147/179 (82.12%), Postives = 157/179 (87.71%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNFYG 606
            DNPT VQLPGMY  EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN++A+ +G FYG
Sbjct:  259 DNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.709e-79
Identity = 146/216 (67.59%), Postives = 170/216 (78.70%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNFYGKAAQQNECSSSLNDVLDLTAQNFDPPARSG*GKFAIT 717
            D PT VQLPGMY   ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR W            LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN +A+++G+FYGK AQQ           D  A+N+DP ARS  G    T
Sbjct:  249 DAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVP-EGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 5.356e-78
Identity = 150/211 (71.09%), Postives = 161/211 (76.30%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNFYGKAAQQNECSSSLNDVLDLTAQNFDPPARSG*G 702
            DNPT VQLPGMY  EEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVR +            LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ANA+AI  G FYGK AQQ           D  A+NFDP ARS  G
Sbjct:  259 DNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVP-EGCTDPVAENFDPTARSDDG 468          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.193e-77
Identity = 141/180 (78.33%), Postives = 156/180 (86.67%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNFYGK 609
            D PT VQLPGMY  EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN +A+++G FYGK
Sbjct:  246 DAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.535e-77
Identity = 140/177 (79.10%), Postives = 153/177 (86.44%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNF 600
            DNPT VQLPGMY  EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN +AI+ G F
Sbjct:  259 DNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 2.250e-76
Identity = 144/211 (68.25%), Postives = 162/211 (76.78%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNFYGKAAQQNECSSSLNDVLDLTAQNFDPPARSG*G 702
            DNPT VQLPGMY  ++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVR W            LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN +AI  G F+GKAAQQ     +     D  A+N+DP ARS  G
Sbjct:  257 DNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVA-QGCTDPEAKNYDPTARSDDG 466          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 6.548e-76
Identity = 137/178 (76.97%), Postives = 153/178 (85.96%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNFY 603
            DNPT VQLPGMY  EEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG AN +AI+SG+F+
Sbjct:  261 DNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 282.722 bits (722), Expect = 1.905e-75
Identity = 137/178 (76.97%), Postives = 154/178 (86.52%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNFY 603
            DNPT VQLPGMY  E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEAN +A+++G+F+
Sbjct:  255 DNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
The following BLAST results are available for this feature:
BLAST of EY665940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA1_LARTR3.585e-8274.53Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.362e-8169.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO2.569e-8082.12Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU3.709e-7967.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH5.356e-7871.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.193e-7778.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR4.535e-7779.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.250e-7668.25Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU6.548e-7676.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.905e-7576.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-007-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665940 ID=EY665940; Name=EY665940; organism=Citrus sinensis; type=EST; length=892bp
CCTGGCGGGTACGGGCCGGGAATTCCGGGTCGACCCCGCGTCCGAACGCC
ACACTCATGAACCTCTTTTGATAACCCAACTTGTGTCCAACTCCCTGGTA
TGTACTATTAGGAGGAGAACCCCCGTGTCCCAATCATAGTCACCGGTAAT
GACTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAA
ATTCTACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGCAAGGGTA
TCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAAGCTTGTTGAC
ACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAGGGCCAGAGT
CTATGATGATGAGGTGAGGAATTGGATCTCTGGTATTGGTGTTGGAAGCA
TTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAA
CCAAGGATGACAATGGAGAAGCTGCTCGAGTACGGAAACATGATTGTGCA
AGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAGTATTTGAGTG
AGGCCGCTCTTGGTGAAGCTAATGCAAATGCTATTCAGAGTGGAAATTTC
TATGGCAAAGCAGCCCAGCAAAATGAATGTTCCAGTTCCCTGAACGATGT
ACTGGATCTAACGGCACAAAATTTTGATCCACCTGCAAGAAGTGGATGAG
GGAAGTTCGCAATAACCGCCTTTAGCGCCTTGTTTTCTAAGGGTTTCAAA
ACCGGCCCTCTTTTCCTTCTAGGATGCGGAAAAATCACAAACAATTTGTT
TGCATTTTCCTTTCCTTTGTCAACTAAGAAAACAATCCTTCCAACTTTTG
GGTTAAACTCTCACGTTTTTTTTATTCGCCTTTAAAACAAAT
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