CX675494

Overview
NameCX675494
Unique NameCX675494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3410 contig Csv1_Contig3410:73..535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675494 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.288e-28
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 3
Query:  258 AMLKLGMKPIPGVSRVTVKKSKNILFVISEPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKVP 461
            AMLKLGMKP+ GVSRVT+KKSKNILFVIS PDVFKSPTSDTY+ FGEAKIEDLSSQLQTQAAEQFK P
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQAAEQFKAP 139          
BLAST of CX675494 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.903e-28
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 3
Query:  258 AMLKLGMKPIPGVSRVTVKKSKNILFVISEPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKVP 461
            AMLKLGMKPI GVSRVTVKKSKNILFVIS+PDVFKSP SDTYV+FGEAKIEDLSSQLQ+QAAEQFK P
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQAAEQFKAP 132          
BLAST of CX675494 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.657e-28
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 3
Query:  258 AMLKLGMKPIPGVSRVTVKKSKNILFVISEPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKVP 461
            AMLKLGMKPI GVSRVTVKKSKNILFVIS+PDVFKSP SDTYV+FGEAKIEDLSSQ+Q+QAAEQFK P
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQAAEQFKAP 136          
BLAST of CX675494 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.063e-25
Identity = 54/68 (79.41%), Postives = 65/68 (95.59%), Query Frame = 3
Query:  258 AMLKLGMKPIPGVSRVTVKKSKNILFVISEPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKVP 461
            AMLKLGMKP+ GVSRVT+K++KN+LF IS+PDVFKSP S+TYV+FGEAKIEDLSSQLQTQAA+QF++P
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQFRMP 146          
BLAST of CX675494 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.997e-25
Identity = 52/68 (76.47%), Postives = 64/68 (94.12%), Query Frame = 3
Query:  258 AMLKLGMKPIPGVSRVTVKKSKNILFVISEPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKVP 461
            AMLKLGMKP+  VSRVT+K+SKN+LFVIS+PDVFKSP S+TYV+FGEAKI+D+SSQLQ QAA++FK+P
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQAAQRFKMP 141          
BLAST of CX675494 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.832e-24
Identity = 49/68 (72.06%), Postives = 65/68 (95.59%), Query Frame = 3
Query:  258 AMLKLGMKPIPGVSRVTVKKSKNILFVISEPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKVP 461
            A+LKLGMKP+  VSRVT+K++KN+LFVIS+PDV+KSP ++TYV+FGEAK++DLSSQLQTQAA++FK+P
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQAAQRFKMP 138          
BLAST of CX675494 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.200e-22
Identity = 49/68 (72.06%), Postives = 60/68 (88.24%), Query Frame = 3
Query:  258 AMLKLGMKPIPGVSRVTVKKSKNILFVISEPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKVP 461
            AM KLG++ + GV+RVT++KSKNILFVI++PDV+KSP SDTY+VFGEAKIEDLS Q Q  AAE+FKVP
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVP 146          
BLAST of CX675494 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.200e-22
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 3
Query:  258 AMLKLGMKPIPGVSRVTVKKSKNILFVISEPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKVP 461
            AM KLG++ I GV+R+T++KSKNILFVI++PDVFKSP SDTYVVFGEAKIEDLS Q+   AAE+FKVP
Sbjct: 1363 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVP 1430          
BLAST of CX675494 vs. ExPASy Swiss-Prot
Match: NACAD_HUMAN (NAC-alpha domain-containing protein 1 OS=Homo sapiens GN=NACAD PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 3.200e-22
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 3
Query:  258 AMLKLGMKPIPGVSRVTVKKSKNILFVISEPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKVP 461
            AM KLG++ I GV+R+T++KSKNILFVI++PDVFKSP SDTYVVFGEAKIEDLS Q+   AAE+FKVP
Sbjct: 1420 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVP 1487          
BLAST of CX675494 vs. ExPASy Swiss-Prot
Match: NACA_DROME (Nascent polypeptide-associated complex subunit alpha OS=Drosophila melanogaster GN=Nacalpha PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 7.129e-22
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 3
Query:  261 MLKLGMKPIPGVSRVTVKKSKNILFVISEPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKVP 461
            MLKLG+K I GV+RVT++KSKNILFVI+ PDV+K+P SDTY+VFGEAKIEDLS Q Q  AAE+FK P
Sbjct:   80 MLKLGLKQIQGVNRVTIRKSKNILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAAAEKFKAP 146          
The following BLAST results are available for this feature:
BLAST of CX675494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NACA_PINTA2.288e-2889.71Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH3.903e-2891.18Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH6.657e-2889.71Nascent polypeptide-associated complex subunit alp... [more]
NACA2_ARATH1.063e-2579.41Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH8.997e-2576.47Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH5.832e-2472.06Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI3.200e-2272.06Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE3.200e-2273.53NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACAD_HUMAN3.200e-2273.53NAC-alpha domain-containing protein 1 OS=Homo sapi... [more]
NACA_DROME7.129e-2273.13Nascent polypeptide-associated complex subunit alp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62F04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F04-L8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675494 ID=CX675494; Name=CX675494; organism=Citrus sinensis; type=EST; length=463bp
CTTTCGTGTCCGCTTCTCGTTCTCAAGTCTCAACACCCAGCCCAAAAAAA
ATGACTGCTCAGTCTCAAGAAGAGCTCCTCGCTGCCCATCTTGAAGAGCA
AAAGCTCAACCCCGATGAGCCTGTAGTTGAGGACGACGATAATGAGGATG
ATGATGAGGAGGATGAGGATGATGACAAGGATGAAGACGATGTGGAAGGG
AAAGGAGATGGAAGTGGTCGCTCAAAACAGAGCAGGAGTGAAAAGAAGAG
TCGGAAAGCAATGTTGAAACTTGGAATGAAGCCTATCCCTGGTGTCAGTC
GAGTTACAGTTAAAAAGAGCAAAAATATTTTGTTTGTTATCTCCGAACCA
GATGTTTTCAAGAGTCCTACATCTGACACATACGTTGTCTTTGGGGAAGC
AAAGATCGAGGATCTGAGTTCACAACTGCAAACTCAGGCTGCAGAGCAGT
TCAAGGTCCCTCC
back to top