CN187709

Overview
NameCN187709
Unique NameCN187709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187709 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.371e-68
Identity = 121/203 (59.61%), Postives = 156/203 (76.85%), Query Frame = 1
Query:  202 LFSLCSLISRAFSHETVNAHNNHILPRPLILKYPDNLIETQLNQLNEEVKLQCTTWRFAVEANNLNPWKTIPRECLEYVRDYMMGRGYGLDLERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFDPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK 810
            +F    L++ A   E +N+H   + PRPLI++YP+        QL +E+K  CTTWRF VE NNL+PWKTIP EC +YV++YM+G GY ++++RVS+EAG YAKSV+L  DG+D WIFD+DETLLSNLPYY +H YGLE+FD VEFDKWVE   +PA+ +SLKLY+EVL LGFK+FLLTGRSE+ RS+TV+NL+NAG   W K
Sbjct:    3 IFVFLVLLTVAIGTENLNSH---VFPRPLIIEYPEK-------QLRDELK--CTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHDWHK 193          
BLAST of CN187709 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.551e-33
Identity = 65/154 (42.21%), Postives = 106/154 (68.83%), Query Frame = 1
Query:  349 KLQCTTWRFAVEANNLNPWKTIPRECLEYVRDYMMGRGYGLDLERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFDPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK 810
            +++C +WR AVEA+N+  ++TIP EC+E  ++Y+ G  Y  D + V+ +A  YA+ +E+    KD ++F ID T+LSN+PYY++HGYG+E F+   +D+WV K  +PA+  +LK Y +++ LGFKI  L+GR+  ++++T  NL  AG   W+K
Sbjct:   39 EVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEVHP--KDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEK 190          
BLAST of CN187709 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.551e-33
Identity = 65/154 (42.21%), Postives = 106/154 (68.83%), Query Frame = 1
Query:  349 KLQCTTWRFAVEANNLNPWKTIPRECLEYVRDYMMGRGYGLDLERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFDPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK 810
            +++C +WR AVEA+N+  ++TIP EC+E  ++Y+ G  Y  D + V+ +A  YA+ +E+    KD ++F ID T+LSN+PYY++HGYG+E F+   +D+WV K  +PA+  +LK Y +++ LGFKI  L+GR+  ++++T  NL  AG   W+K
Sbjct:   36 EVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEVHP--KDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEK 187          
BLAST of CN187709 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.112e-31
Identity = 69/166 (41.57%), Postives = 107/166 (64.46%), Query Frame = 1
Query:  313 IETQLNQLNEEVKLQCTTWRFAVEANNLNPWKTIPRECLEYVRDYMMGRGYGLDLERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFDPVEFDKWVEKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYWDK 810
            ++T   + + EVK  C ++R AVEA+N+  +KTIP EC+E  +DY+ G  +  D + V+ +A  YA   E+  +  D +IF ID T+LSN+PYY++HGYG+E F+   +D+WV K  +PA+  +LK Y ++L LGFKI  L+GR   + ++T  NL  AG   W++
Sbjct:   30 MKTGYGERSSEVK--CASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQ 191          
BLAST of CN187709 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.710e-28
Identity = 59/151 (39.07%), Postives = 94/151 (62.25%), Query Frame = 1
Query:  358 CTTWRFAVEANNLNPWKTIPRECLEYVRDYMM-GRGYGLDLERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFDPVEFDKWV-EKAMSPAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW 804
            C +W   VE +N+  + T+P  C +YV DY++  + Y  D + V  EA  YAK + L+ D  + WIFD+D+TLLS++PYY ++GYG E  DP  +  W+   A +P +  +L LY+ ++ LG +  +L+ R +  +++T+DNL  AGV YW
Sbjct:   52 CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAGVTYW 202          
BLAST of CN187709 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.077e-26
Identity = 71/208 (34.13%), Postives = 110/208 (52.88%), Query Frame = 1
Query:  196 VLLFSLCSLISRAFSHETVNAHNN---HILPRPLILKYPDNLIETQLNQLNEEVKLQCTTWRFAVEANNLNPWKTIPRECLEYVRDYMM-GRGYGLDLERVSNEAGVYAKSVELRGDGKDAWIFDIDETLLSNLPYYQEHGYGLEIFDPVEFDKWVEKAMS-PAIEASLKLYEEVLGLGFKIFLLTGRSEKQRSITVDNLINAGVRYW 804
            +L  SL  L++   SH   +A       +L    I      L+E +   +N      C +W   VE +N+  + T+P  C  YV DY++  + Y  D + V+ EA  YAK + L+ D  + WIFD+D+TLLS++PYY ++GYG E   P  +  W+E   S P +  +L LYE +L LG +  +++ R +K   +TV+NL   GV  W
Sbjct:    3 ILSLSLLLLLAATVSHVQSSASVPGLIELLESNTIFGNEAELLEKEGLSINYP---NCRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIISDRWKKLSEVTVENLKAVGVTKW 207          
The following BLAST results are available for this feature:
BLAST of CN187709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC7.371e-6859.61Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPA_SOYBN1.551e-3342.21Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN1.551e-3342.21Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSPB_SOYBN1.112e-3141.57Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
VSP2_ARATH5.710e-2839.07Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH1.077e-2634.13Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187709 ID=CN187709; Name=CN187709; organism=Citrus sinensis; type=EST; length=811bp
ATGAAACCTTGTTACTGTTTCAAAGTTTCTTCTTTTCTTTTCCCTTCATT
TTCATTTTCCCAAATGCAGAAGGGAACAAGATAAAACCAAACAAGCCCCT
TTTGGCTTCTAATCAATACCCATTTGTAAAAGCCCACAATGCCTTTTCTT
CTTGACAGCTTTAGATCAATTTCAACGATGGGTTTGTTTAGGATTGTCTT
GTTATTCTCGTTATGTTCGTTAATTTCTCGTGCCTTTTCTCACGAGACAG
TCAATGCTCACAACAATCACATTCTGCCCAGGCCTTTGATTCTCAAGTAC
CCAGATAATTTAATCGAGACCCAGTTGAATCAACTCAATGAAGAGGTGAA
ACTACAGTGTACGACCTGGAGGTTTGCGGTTGAAGCTAATAATTTGAATC
CCTGGAAGACGATTCCGCGTGAGTGTTTGGAGTATGTGAGGGATTATATG
ATGGGTCGAGGTTATGGACTTGATCTCGAGAGGGTTTCGAATGAGGCGGG
TGTTTATGCGAAGAGTGTTGAATTGCGTGGTGATGGGAAAGATGCGTGGA
TTTTTGATATTGATGAGACTTTGTTGTCAAATCTTCCTTATTATCAAGAG
CATGGTTATGGATTGGAGATTTTCGATCCAGTGGAGTTTGATAAGTGGGT
TGAGAAGGCCATGTCACCGGCAATAGAGGCCAGTTTGAAGCTCTATGAAG
AGGTTCTGGGATTGGGCTTTAAGATTTTTTTGCTGACTGGGCGCAGTGAG
AAGCAAAGGAGTATTACTGTTGACAATTTGATCAATGCAGGGGTTCGATA
TTGGGACAAAC
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