CK938420
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK938420 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 9.337e-24 Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 1 Query: 79 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXGTTRGTVPFLFVRGDGVILVSPPLR 345 + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG +T+ +P LFVRGDGV+LV+PPLR Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
BLAST of CK938420 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 9.337e-24 Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 1 Query: 79 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXGTTRGTVPFLFVRGDGVILVSPPLR 345 + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG +T+ +P LFVRGDGV+LV+PPLR Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
BLAST of CK938420 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3) HSP 1 Score: 108.997 bits (271), Expect = 9.337e-24 Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 1 Query: 79 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXGTTRGTVPFLFVRGDGVILVSPPLR 345 + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG +T+ +P LFVRGDGV+LV+PPLR Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
BLAST of CK938420 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 3.923e-22 Identity = 53/92 (57.61%), Postives = 61/92 (66.30%), Query Frame = 1 Query: 76 KSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXGTTRGTVPFLFVRGDGVILVSPPLRTA 351 + V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL + + LFVRGDGVIL+SPPLRT+ Sbjct: 6 EGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97
BLAST of CK938420 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 1.543e-18 Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 1 Query: 82 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXGTTRGTVPFLFVRGDGVILVSPP 339 AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LG T R LFVRGD VIL++PP Sbjct: 6 AVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91 The following BLAST results are available for this feature:
BLAST of CK938420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK938420 ID=CK938420; Name=CK938420; organism=Citrus sinensis; type=EST; length=449bpback to top |