CK938420

Overview
NameCK938420
Unique NameCK938420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938420_ssr13 microsatellite CK938420_ssr13:13..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2804 contig Csv1_Contig2804:91..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938420 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 9.337e-24
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   79 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXGTTRGTVPFLFVRGDGVILVSPPLR 345
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                     +T+  +P LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of CK938420 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 9.337e-24
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   79 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXGTTRGTVPFLFVRGDGVILVSPPLR 345
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                     +T+  +P LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of CK938420 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 9.337e-24
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   79 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXGTTRGTVPFLFVRGDGVILVSPPLR 345
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                     +T+  +P LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of CK938420 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.923e-22
Identity = 53/92 (57.61%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   76 KSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXGTTRGTVPFLFVRGDGVILVSPPLRTA 351
            +  V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL                        +  +  LFVRGDGVIL+SPPLRT+
Sbjct:    6 EGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97          
BLAST of CK938420 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.543e-18
Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   82 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXGTTRGTVPFLFVRGDGVILVSPP 339
            AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LG                     T R     LFVRGD VIL++PP
Sbjct:    6 AVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91          
The following BLAST results are available for this feature:
BLAST of CK938420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM3_MOUSE9.337e-2460.67U6 snRNA-associated Sm-like protein LSm3 OS=Mus mu... [more]
LSM3_HUMAN9.337e-2460.67U6 snRNA-associated Sm-like protein LSm3 OS=Homo s... [more]
LSM3_BOVIN9.337e-2460.67U6 snRNA-associated Sm-like protein LSm3 OS=Bos ta... [more]
LSM3_DICDI3.923e-2257.61Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
LSM3_SCHPO1.543e-1854.65Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004442_H09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938420 ID=CK938420; Name=CK938420; organism=Citrus sinensis; type=EST; length=449bp
GGGGAGATCGGGGAGAGAGAGAGAGAGAGAGAGAGAGCGAGGGAGAGCAA
CTGAGCAAGAATGGCAAGCGAAGAAAAAAGCGCAGTGAAGGAGCCGTTGG
ATCTCATAAGACTCAGCCTCGACGAGCGCATCTACGTTAAGCTCCGATCC
GACCGTGAACTCCGCGGCAAACTCCATGCATATGATCAACATTTAAACAT
GATTCTTGGGGACGTCGAAGAAATTGTTACTACTGTGGAAATCGATGAGG
AAACTTATGAAGAGATTGTTGGGACTACAAGGGGTACTGTTCCGTTTCTC
TTTGTAAGAGGGGATGGTGTCATCCTAGTTTCTCCTCCACTGAGGACAGC
TTAAATCGAAGAACAGGGTGCACACTCGATGAAGAAACCACCAATTTTAC
ATTAATGCTTTTCTTTCTGTCACTGTTTTTGCATTTCCTAGTTTAACAT
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