CK938412

Overview
NameCK938412
Unique NameCK938412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length209
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:317..525. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK938412 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.085e-17
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   70 GKVKIGINGFG*IGRLVARVILPRDDVELVAVNDPFITTDYMTYMF 207
            GK+KIGINGFG IGRLVARV L RDDVELVAVNDPFITTDYMTYMF
Sbjct:    3 GKIKIGINGFGRIGRLVARVALARDDVELVAVNDPFITTDYMTYMF 48
[Close]
BLAST of CK938412 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.552e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   67 MGKVKIGINGFG*IGRLVARVILPRDDVELVAVNDPFITTDYMTYMF 207
            MGK+KIGINGFG IGRLVARV L  DDVELVAVNDPFITT+YMTYMF
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTEYMTYMF 47
[Close]
BLAST of CK938412 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.552e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   67 MGKVKIGINGFG*IGRLVARVILPRDDVELVAVNDPFITTDYMTYMF 207
            MGK+KIGINGFG IGRLVARV L  +DVELVAVNDPFITTDYMTYMF
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMF 47
[Close]
BLAST of CK938412 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.552e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   67 MGKVKIGINGFG*IGRLVARVILPRDDVELVAVNDPFITTDYMTYMF 207
            MGK+KIGINGFG IGRLVARV L  +DVELVAVNDPFITTDYMTYMF
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMF 47
[Close]
BLAST of CK938412 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.552e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   67 MGKVKIGINGFG*IGRLVARVILPRDDVELVAVNDPFITTDYMTYMF 207
            MGK+KIGINGFG IGRLVARV L  +DVELVAVNDPFITTDYMTYMF
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMF 47
[Close]
BLAST of CK938412 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.552e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   67 MGKVKIGINGFG*IGRLVARVILPRDDVELVAVNDPFITTDYMTYMF 207
            M KVK+GINGFG IGRLVARVIL RDD ELVAVNDPFI+TDYMTYMF
Sbjct:    1 MAKVKVGINGFGRIGRLVARVILQRDDCELVAVNDPFISTDYMTYMF 47
[Close]
BLAST of CK938412 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.552e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   67 MGKVKIGINGFG*IGRLVARVILPRDDVELVAVNDPFITTDYMTYMF 207
            MGK+KIGINGFG IGRLVARV L  +DVELVAVNDPFITTDYMTYMF
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMF 47
[Close]
BLAST of CK938412 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.027e-16
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:   73 KVKIGINGFG*IGRLVARVILPRDDVELVAVNDPFITTDYMTYMF 207
            K+KIGINGFG IGRLVARV L RDDVELVAVNDPFITTDYMTYMF
Sbjct:    4 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMF 48
[Close]
BLAST of CK938412 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.027e-16
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:   73 KVKIGINGFG*IGRLVARVILPRDDVELVAVNDPFITTDYMTYMF 207
            K+KIGINGFG IGRLVARV L RDDVELVAVNDPFITTDYMTYMF
Sbjct:    5 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMF 49
[Close]
BLAST of CK938412 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.648e-16
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   67 MGKVKIGINGFG*IGRLVARVILPRDDVELVAVNDPFITTDYMTYMF 207
            M KVKIGINGFG IGRLVARVIL  DD ELVA+NDPFITTDYMTYMF
Sbjct:    1 MAKVKIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMF 47
The following BLAST results are available for this feature:
BLAST of CK938412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
G3PC_RANAC4.085e-1791.30Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU1.552e-1687.23Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE1.552e-1687.23Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ1.552e-1687.23Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI1.552e-1687.23Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR1.552e-1687.23Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE1.552e-1687.23Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA2.027e-1691.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI2.027e-1691.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU2.648e-1687.23Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_B05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938412 ID=CK938412; Name=CK938412; organism=Citrus sinensis; type=EST; length=209bp
GCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACCGCTCAATT
TCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATTCG
GATGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCCGAGGGACGATGTT
GAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATGACATA
CATGTTTAA
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