CK938407

Overview
NameCK938407
Unique NameCK938407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938407_ssr80 microsatellite CK938407_ssr80:80..97. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12436 contig Csv1_Contig12436:80..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938407 vs. ExPASy Swiss-Prot
Match: CHAC2_DANRE (Cation transport regulator-like protein 2 OS=Danio rerio GN=chac2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.801e-29
Identity = 74/179 (41.34%), Postives = 101/179 (56.42%), Query Frame = 1
Query:  250 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDPKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIMELANEVRK 780
            WVFGYGSL+W   F Y++K +GF+K + R F     DHRG P  P R  TL +  E   WGVAY +  G E+E    EYL+ RE        V F+ + E  QP +   +++  + D   N  YLGPAPLE +A+QI  +VGP G N DYLF+L  A+  +  E  DD++  L   V++
Sbjct:    2 WVFGYGSLIWKVDFPYEDKRVGFVKGFSRRFWQGSTDHRGVPGKPGRVVTLIEDPEGCVWGVAYKLPSGQEQE--VKEYLDYREKGGYGVITVTFHPKDEQQQP-MQDTLLYIGSCD---NPNYLGPAPLETIAQQIVKSVGPSGKNTDYLFELADALRQLVPEDLDDHLFSLERLVKQ 174          
BLAST of CK938407 vs. ExPASy Swiss-Prot
Match: CHAC2_XENLA (Cation transport regulator-like protein 2 OS=Xenopus laevis GN=chac2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.065e-28
Identity = 76/179 (42.46%), Postives = 101/179 (56.42%), Query Frame = 1
Query:  250 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDPKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIMELANEVRK 780
            WVFGYGSL+W   F Y EK++G+I  Y R F     DHRG P  P R  TL +  E   WGVAY +  G E+E  A  YL+ RE      + V FY +    QP    V+++  T D   N  YLGPAPLE++A QI  AVGP G N +YLF+L  ++ ++  E  D+++  L   VR+
Sbjct:    2 WVFGYGSLIWKVDFPYVEKLVGYIMCYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPEGKEEEVKA--YLDFREKGGYRTSTVVFYPKDPSIQP--FNVLLYIGTCD---NPNYLGPAPLEDIAEQILNAVGPSGRNTEYLFELANSLRNLVPEDADEHLFSLEKLVRQ 173          
BLAST of CK938407 vs. ExPASy Swiss-Prot
Match: CHAC2_CHICK (Cation transport regulator-like protein 2 OS=Gallus gallus GN=chac2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.308e-28
Identity = 74/165 (44.85%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  250 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDPKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHED 744
            WVFGYGSL+W   F Y EK++G I+ Y R F     DHRG P  P R  TL +  E   WGVAY +  G E E  A  YL+ RE      T V FY +    +P    V+++  T D   N  YLGPAPL+E+A QI  AVGP G N +YLF+L  +M ++  ED
Sbjct:    2 WVFGYGSLIWKVDFPYQEKMVGRIRGYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPAGQECEVKA--YLDFREKGGYRTTTVVFYPKDSSIKP--FDVLLYIGTRD---NPNYLGPAPLQEIAEQIIDAVGPSGRNTEYLFELANSMRNLVPED 159          
BLAST of CK938407 vs. ExPASy Swiss-Prot
Match: CHAC2_HUMAN (Cation transport regulator-like protein 2 OS=Homo sapiens GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.635e-27
Identity = 73/181 (40.33%), Postives = 102/181 (56.35%), Query Frame = 1
Query:  250 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDPKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIMELANEVRKEL 786
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WGVAY +  G E+E  A  YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  ++ ++  E  D+++  L   V++ L
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCVWGVAYRLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDPTTKP--FSVLLYIGTCD---NPDYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEADEHLFALEKLVKERL 175          
BLAST of CK938407 vs. ExPASy Swiss-Prot
Match: CHAC2_RAT (Cation transport regulator-like protein 2 OS=Rattus norvegicus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.869e-27
Identity = 72/181 (39.78%), Postives = 100/181 (55.25%), Query Frame = 1
Query:  250 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDPKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIMELANEVRKEL 786
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WGVAY +  G E+E     YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  ++  +  E  D+++  L   V++ L
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKP--FSVLLYIGTCD---NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSIRKLVPEDADEHLFSLEKLVKERL 175          
BLAST of CK938407 vs. ExPASy Swiss-Prot
Match: CHAC2_MOUSE (Cation transport regulator-like protein 2 OS=Mus musculus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.869e-27
Identity = 72/181 (39.78%), Postives = 100/181 (55.25%), Query Frame = 1
Query:  250 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDPKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIMELANEVRKEL 786
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WGVAY +  G E+E     YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  ++  +  E  D+++  L   V++ L
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKP--FSVLLYIGTCD---NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSVRKLVPEDADEHLFSLEKLVKERL 175          
BLAST of CK938407 vs. ExPASy Swiss-Prot
Match: CHAC1_MOUSE (Cation transport regulator-like protein 1 OS=Mus musculus GN=Chac1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.561e-24
Identity = 70/172 (40.70%), Postives = 90/172 (52.33%), Query Frame = 1
Query:  217 PFFL*FGKMVFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC---EYDPKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 723
            PF+        W+FGYGSLVW P F Y +  +GF++ Y R F      HRG+ + P R  TL +  E   WGVAY VRG  E+   A++YL  RE     YD K  V FY +  P QP     + + +TP    N  YLGPAP E +A QI    G  G+N +YL +L   M
Sbjct:   24 PFWGDGDPQALWIFGYGSLVWKPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVRG--EQVNEALKYLNVREAVLGGYDTKE-VTFYPQDTPDQPLT--ALAYVATP---QNPGYLGPAPEEVIATQILACRGFSGHNLEYLLRLADFM 187          
BLAST of CK938407 vs. ExPASy Swiss-Prot
Match: CHAC2_BOVIN (Cation transport regulator-like protein 2 OS=Bos taurus GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.036e-23
Identity = 70/181 (38.67%), Postives = 96/181 (53.04%), Query Frame = 1
Query:  250 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDPKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIMELANEVRKEL 786
            WVFGYGSL+W   F Y +K++G+I  Y R F     DHRG P   +             WGVAY +  G E+E  A  YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  +M  +  E  D+++  L   V++ L
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYISGYSRRFWQGSTDHRGVPGKGS------------VWGVAYKLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDSTTEP--FSVLLYIGTRD---NPNYLGPAPLEDIAEQIFNAAGPSGKNTEYLFELANSMRSLVPEDADEHLFSLEKLVKERL 163          
BLAST of CK938407 vs. ExPASy Swiss-Prot
Match: CHAC1_HUMAN (Cation transport regulator-like protein 1 OS=Homo sapiens GN=CHAC1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.036e-23
Identity = 70/180 (38.89%), Postives = 96/180 (53.33%), Query Frame = 1
Query:  250 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC---EYDPKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIG--HEDDYIMELANEV 774
            W+FGYGSLVW P F Y +  +GF++ Y R F      HRG+ + P R  TL +  E   WGVAY V+G  E+   A++YL  RE     YD K  V FY +  P QP     + + +TP    N  YLGPAP E +A QI    G  G+N +YL +L   M   G   +D+++  + + V
Sbjct:   34 WIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVQG--EQVSKALKYLNVREAVLGGYDTKE-VTFYPQDAPDQP--LKALAYVATP---QNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLAAIVDAV 205          
BLAST of CK938407 vs. ExPASy Swiss-Prot
Match: CHAC1_DANRE (Cation transport regulator-like protein 1 OS=Danio rerio GN=chac1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.036e-23
Identity = 66/165 (40.00%), Postives = 88/165 (53.33%), Query Frame = 1
Query:  235 GKMVFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDP--KTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 723
            GK   W+FGYGSLVW P F+Y    +G+IK Y+R F      HRG  + P R  TL +  +   WGVA+ V G   +E  +++YL  RE          VDF+  G    P     +V+ +TPD   N  YLGPA  EE+A QIA   G  G+N +YL +L + M
Sbjct:    9 GKSSLWIFGYGSLVWKPDFKYKRSKVGYIKGYKRRFWHGDNFHRGDDEMPGRVVTLIEEDDVCTWGVAFEVTGSQMEE--SLKYLNVREAVRGGYLTRAVDFFPRGTNQPP--VQALVYIATPD---NPIYLGPASTEEIASQIAVCKGNSGHNIEYLLRLAEFM 166          
The following BLAST results are available for this feature:
BLAST of CK938407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CHAC2_DANRE4.801e-2941.34Cation transport regulator-like protein 2 OS=Danio... [more]
CHAC2_XENLA4.065e-2842.46Cation transport regulator-like protein 2 OS=Xenop... [more]
CHAC2_CHICK5.308e-2844.85Cation transport regulator-like protein 2 OS=Gallu... [more]
CHAC2_HUMAN2.635e-2740.33Cation transport regulator-like protein 2 OS=Homo ... [more]
CHAC2_RAT5.869e-2739.78Cation transport regulator-like protein 2 OS=Rattu... [more]
CHAC2_MOUSE5.869e-2739.78Cation transport regulator-like protein 2 OS=Mus m... [more]
CHAC1_MOUSE3.561e-2440.70Cation transport regulator-like protein 1 OS=Mus m... [more]
CHAC2_BOVIN1.036e-2338.67Cation transport regulator-like protein 2 OS=Bos t... [more]
CHAC1_HUMAN1.036e-2338.89Cation transport regulator-like protein 1 OS=Homo ... [more]
CHAC1_DANRE1.036e-2340.00Cation transport regulator-like protein 1 OS=Danio... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004443_A11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938407 ID=CK938407; Name=CK938407; organism=Citrus sinensis; type=EST; length=917bp
GGGGAGGCGTGTTTATATAACTCGCAACCTCCATCCCTCTCTTTGCTCGT
GTCTCAATTGCACCCACACGAGAGACGGGGAGAGAGAGAGAGAGAGAGGA
AGCGAAGAGAAATAGAAAGAGAGAATACAGAATCCTAACCTTAGGCGTTT
TAGCTTGTTTCGTTTCCCTCTTTTGCTTCAAGTTTCTTCCTTTCTCTCGC
GATTTCCTTGTATGCTCCTTTCTTTCTCTGATTTGGGAAAATGGTGTTCT
GGGTTTTTGGGTATGGATCATTGGTGTGGAACCCAGGGTTTGAATATGAT
GAGAAAATTTTAGGCTTCATCAAGGACTACAGGCGCGTGTTTGATCTTGC
ATGCATTGATCACAGGGGTACACCTCAACACCCGGCTAGAACTTGCACGC
TGGAAAAATCTCAAGAAACCATTTGTTGGGGTGTTGCTTATTGTGTCCGA
GGAGGTCCTGAAAAGGAAAGACTCGCTATGGAGTATTTGGAACGAAGAGA
ATGCGAGTACGACCCTAAGACCCTTGTAGACTTTTACAGGGAAGGGGAGC
CTTCACAGCCGGCTCTAACTGGGGTTATAGTTTTCACGTCTACTCCAGAC
AAAGTATCAAACAAGTATTATCTGGGGCCTGCTCCATTGGAGGAAATGGC
TAGGCAAATTGCAACGGCTGTCGGACCCTGTGGAAACAATAGAGACTACC
TTTTCAAGTTGGAGAAGGCCATGTTTGATATTGGTCATGAGGACGACTAC
ATAATGGAGCTGGCAAATGAAGTGAGGAAAGAGCTTGGAACTGCTGAAAA
AGGAATTCTCAAGGAGAGGAAGTTGGTTGGGCCATCATCCCGCATGCCGC
TCACAAAATCTCATATTCCAACCCTTCAACTGGGTCTACGCCCCTGAGGC
GGTGGCCATGNNTTCAT
back to top