CK938404

Overview
NameCK938404
Unique NameCK938404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig360 contig Csv1_Contig360:491..1215. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938404 vs. ExPASy Swiss-Prot
Match: APR1_ARATH (5'-adenylylsulfate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=APR1 PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.068e-72
Identity = 126/177 (71.19%), Postives = 149/177 (84.18%), Query Frame = 1
Query:    4 GCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDXXXXXXXXXXXXXSEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 534
            GCEPCT+ VLPGQHEREGRWWWEDAKAKECGLHKGN+K+                 AVADIF S+NLVTL+R G+ENL +L++R+EPW+VVLYAPWC FCQAME SY ELADKLAG+G+KV KFRADGDQKE+AKQ+LQLGSFPTIL FPK+SS+PIKYPSE+RDV+SL +F++ +R
Sbjct:  293 GCEPCTKAVLPGQHEREGRWWWEDAKAKECGLHKGNVKENSDDAKVNGES----KSAVADIFKSENLVTLSRQGIENLMKLENRKEPWIVVLYAPWCPFCQAMEASYDELADKLAGSGIKVAKFRADGDQKEFAKQELQLGSFPTILVFPKNSSRPIKYPSEKRDVESLTSFLNLVR 465          
BLAST of CK938404 vs. ExPASy Swiss-Prot
Match: APR2_ARATH (5'-adenylylsulfate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=APR2 PE=2 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 2.631e-71
Identity = 126/177 (71.19%), Postives = 145/177 (81.92%), Query Frame = 1
Query:    4 GCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDXXXXXXXXXXXXXSEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 534
            GCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIK+ED               AV +IF S N+V L++ G+ENL +L++R+E WLVVLYAPWC FCQAME SY+ELA+KLAG GVKV KFRADG+QKE+AKQ+LQLGSFPTIL FPK + + IKYPSE RDVDSLM+FV+ LR
Sbjct:  285 GCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEEDGAADSKPA-------AVQEIFESNNVVALSKGGVENLLKLENRKEAWLVVLYAPWCPFCQAMEASYIELAEKLAGKGVKVAKFRADGEQKEFAKQELQLGSFPTILLFPKRAPRAIKYPSEHRDVDSLMSFVNLLR 454          
BLAST of CK938404 vs. ExPASy Swiss-Prot
Match: APR3_ARATH (5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.227e-70
Identity = 123/177 (69.49%), Postives = 148/177 (83.62%), Query Frame = 1
Query:    4 GCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDXXXXXXXXXXXXXSEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 534
            GCEPCTR VLPGQHEREGRWWWEDAKAKECGLHKGNIK+               + +VADIFNS+N+V L+R G+ENL +L++R+E W+VVLYAPWC FCQAME S+ ELADKL G+GVKV KFRADGDQK++AK++LQLGSFPTIL FPK+SS+PIKYPSE+RDVDSL +F++ +R
Sbjct:  285 GCEPCTRAVLPGQHEREGRWWWEDAKAKECGLHKGNIKENTNGNATANVNG---TASVADIFNSENVVNLSRQGIENLMKLENRKEAWIVVLYAPWCPFCQAMEASFDELADKLGGSGVKVAKFRADGDQKDFAKKELQLGSFPTILVFPKNSSRPIKYPSEKRDVDSLTSFLNLVR 458          
BLAST of CK938404 vs. ExPASy Swiss-Prot
Match: CYSH_PSEAE (Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa GN=cysH PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1
Query:    4 GCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 114
            GCEPCTRPVLP QHEREGRWWWE+A  KECGLH GN+
Sbjct:  227 GCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNL 263          
BLAST of CK938404 vs. ExPASy Swiss-Prot
Match: CYSH_PSEAB (Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=cysH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1
Query:    4 GCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 114
            GCEPCTRPVLP QHEREGRWWWE+A  KECGLH GN+
Sbjct:  227 GCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNL 263          
BLAST of CK938404 vs. ExPASy Swiss-Prot
Match: CYSH_PSEA8 (Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa (strain LESB58) GN=cysH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1
Query:    4 GCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 114
            GCEPCTRPVLP QHEREGRWWWE+A  KECGLH GN+
Sbjct:  227 GCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNL 263          
The following BLAST results are available for this feature:
BLAST of CK938404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
APR1_ARATH1.068e-7271.195'-adenylylsulfate reductase 1, chloroplastic OS=A... [more]
APR2_ARATH2.631e-7171.195'-adenylylsulfate reductase 2, chloroplastic OS=A... [more]
APR3_ARATH2.227e-7069.495'-adenylylsulfate reductase 3, chloroplastic OS=A... [more]
CYSH_PSEAE7.780e-1583.78Phosphoadenosine phosphosulfate reductase OS=Pseud... [more]
CYSH_PSEAB7.780e-1583.78Phosphoadenosine phosphosulfate reductase OS=Pseud... [more]
CYSH_PSEA87.780e-1583.78Phosphoadenosine phosphosulfate reductase OS=Pseud... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004443_C09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938404 ID=CK938404; Name=CK938404; organism=Citrus sinensis; type=EST; length=725bp
GGGGGGTGTGAGCCATGCACAAGGCCTGTCCTTCCAGGACAGCATGAAAG
AGAAGGAAGGTGGTGGTGGGAGGATGCCAAGGCTAAGGAGTGTGGCCTCC
ACAAAGGAAATATAAAACAGGAAGATGCAGCAGTGAATGGCAATGGTAAT
GGGGCTGGCAATGCAAGTGAAGCAGTTGCTGATATTTTCAACTCTCAGAA
CTTGGTGACTTTGAATAGAACAGGAATGGAGAATTTGGCAAGACTGGATC
ATCGACAAGAGCCATGGCTTGTTGTGCTGTATGCCCCATGGTGCCAATTC
TGCCAGGCAATGGAAGGATCGTATGTTGAGCTGGCTGACAAGTTAGCAGG
GAATGGTGTGAAGGTGGGCAAGTTCAGAGCAGATGGTGACCAGAAGGAAT
ATGCAAAGCAAAAATTGCAGCTGGGAAGCTTCCCAACAATACTATTTTTC
CCTAAACACTCTTCGAAGCCGATAAAGTACCCCTCAGAAAGGAGGGATGT
AGATTCACTGATGGCTTTTGTGGATGCCCTCCGGTAATTGAATCATAGAT
TTAGCAGCAATACAGCCGATTGGAAAATGCAAAGTGGTAGGAGCTGGAAT
TCATCACAATTAAATTTCTTTTCCCAGCCCTAGAACCCGGGGCCCTGTAA
TGGACCTTGGGCGTTTTTGTGTATTTTTGGTGTAAGGGTCTTTTTTGCAA
TTATTTTTTCAAATGCGTTTCTGGA
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