CX675490

Overview
NameCX675490
Unique NameCX675490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12306 contig Csv1_Contig12306:625..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675490 vs. ExPASy Swiss-Prot
Match: AMPN_ECOLI (Aminopeptidase N OS=Escherichia coli (strain K12) GN=pepN PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 5.793e-37
Identity = 86/215 (40.00%), Postives = 123/215 (57.21%), Query Frame = -2
Query:  228 LTTVENNRSTGEYVFNHHNMXRRALKNIALAYLASLEDADIVELALREYKTATNMTEQFAALAAIVQKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVECVRRLLDHPAFDLRNPNKVYSLIGGFCGS-PVNCHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSRWRRFDETRQNLAKAQLEMIMSANGLSENVFEIASKSLA 869
            L  + N     EY   H ++ +R L+N  L +LA  E      L  +++  A NMT+  AAL+A V      RD ++ ++  KW  + LV++KWF LQA S     +E VR LL H +F + NPN++ SLIG F GS P   HA+DGSGY FL EM+  L+  NPQVASR++    R +R+D  RQ   +A LE +     LS +++E  +K+LA
Sbjct:  656 LLAIYNANYQSEYRVEHEDIAKRTLRNACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWHQNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKALA 870          
BLAST of CX675490 vs. ExPASy Swiss-Prot
Match: AMPN_HAEIN (Aminopeptidase N OS=Haemophilus influenzae GN=pepN PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.151e-35
Identity = 78/203 (38.42%), Postives = 119/203 (58.62%), Query Frame = -2
Query:  231 EYVFNHHNMXRRALKNIALAYLASLEDADIVELALREYKTATNMTEQFAALAAIVQKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVECVRRLLDHPAFDLRNPNKVYSLIGGFCGSPVNC-HAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSRWRRFDETRQNLAKAQLEMIMSANGLSENVFEIASKSL 836
            +Y     ++  R ++N+ L YLA     +   L  + Y  A NMT+  AAL+   +     RD +L DF  KWQHD LV++KWFALQA       +E ++ L+DHP+F+  NPN++ SL+G F    +   H   GSGY+FL +++++L++ NPQVA+R++    R+ RFD  RQ L K  LE +     LS+++FE   K+L
Sbjct:  668 DYQVTQQDIALRVMRNLCLTYLAYTNLGN--NLVQKHYNNANNMTDTLAALSVATKAALLCRDVLLADFEQKWQHDGLVMDKWFALQATRPDDNVLEIIQLLMDHPSFNFNNPNRLRSLVGSFANHNLKAFHNVSGSGYRFLTDVLIRLNESNPQVAARLIEPLIRFSRFDAQRQTLMKRALERLSVVENLSKDLFEKIEKAL 868          
BLAST of CX675490 vs. ExPASy Swiss-Prot
Match: AMPN_CAUCR (Aminopeptidase N OS=Caulobacter crescentus GN=pepN PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.528e-29
Identity = 71/204 (34.80%), Postives = 113/204 (55.39%), Query Frame = -2
Query:  231 GEYVFNHHNMXRRALKNIALAYLASLEDADIVELALREYKTATNMTEQFAALAAIVQKPGKIRDEVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVECVRRLLDHPAFDLRNPNKVYSLIGGFCG-SPVNCHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSRWRRFDETRQNLAKAQLEMIMSANGLSENVFEIASKSL 839
            GE+  +     RRAL+N     L++   A+ +   L  +  A NMT+    L  +V   G  R++ L+ F+  W+ + LV++KWFA+Q     P  +E V  L  HP F+  NPN++ +L+  F   +P   H   G+GY FL + ++++D  NP  A+R+V     WRR+     +L +AQLE I++   LS+NV E+ASK+L
Sbjct:  659 GEFSSDAAAAGRRALRNACAEALSADPHAENLARLLGHFGAARNMTDMIGGLYPMVAMGGVPREKALESFHHAWRTEPLVLDKWFAVQGRDPNPDALERVIALTQHPDFEPTNPNRLRALVSTFANFNPARFHDPSGAGYAFLADEILKVDAFNPMTAARLVEPLGGWRRYKPELGDLMRAQLERIVAHPNLSKNVLELASKAL 862          
BLAST of CX675490 vs. ExPASy Swiss-Prot
Match: AMP1_PLAFQ (M1 family aminopeptidase OS=Plasmodium falciparum (isolate FcB1 / Columbia) PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.876e-11
Identity = 36/133 (27.07%), Postives = 65/133 (48.87%), Query Frame = -2
Query:  249 EVLDDFYGKWQHDYLVVNKWFALQAMSDIPGNVECVRRLLDHPAFDLRNPNKVYSLIGGFCGSPVNCHAKDGSGYKFLGEMVVQLDKINPQVASRMVSAFSRWRRFDETRQNLAKAQLEMIMSANGLSENVFE 647
            E+ D  Y   + D L++ +W    + SD     E +++L +    D +NPN + ++   F  +    H   G GYK + E++ + DK NP VA+++   F  W + D  RQ L   ++  ++    +S N+ E
Sbjct:  944 ELYDKTYKLSKDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYLPFTNNLRRFHDISGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQELMLNEMNTMLQEPNISNNLKE 1076          
The following BLAST results are available for this feature:
BLAST of CX675490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AMPN_ECOLI5.793e-3740.00Aminopeptidase N OS=Escherichia coli (strain K12) ... [more]
AMPN_HAEIN4.151e-3538.42Aminopeptidase N OS=Haemophilus influenzae GN=pepN... [more]
AMPN_CAUCR1.528e-2934.80Aminopeptidase N OS=Caulobacter crescentus GN=pepN... [more]
AMP1_PLAFQ1.876e-1127.07M1 family aminopeptidase OS=Plasmodium falciparum ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62F01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F01-L2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675490 ID=CX675490; Name=CX675490; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTAACAATAATAATGAGACTAGGATAATAAATCAATAATCCCACAT
TGAAGAGATTCTACATTGAAAGTTTGAAAATATCAGGGGACGTTCCGTGC
ATGAAGGTTTCCATATTCTGTAGGGGAGCAAAACACAGTAATGGCTCCCA
CATTAACATAAATTTATTTTTCACATCAAAACTAGCCAAAGCAACATTTT
TTTCTTATTTTCCAAATAAATTCATGCAGCTAAACTTTTTGAGGCAATCT
CGAACACGTTCTCTGAGAGTCCATTGGCAGACATAATCATCTCCAGCTGA
GCCTTGGCAAGGTTTTGTCGAGTTTCATCAAAACGCCTCCATCTAGAGAA
GGCTGACACCATTCGGGAAGCCACCTGAGGATTAATTTTGTCTAATTGGA
CCACCATTTCACCCAAGAACTTATAGCCGGAGCCATCCTTCGCGTGGCAA
TTCACGGGGGAACCACAAAATCCTCCAATGAGCGAGTATACCTTGTTTGG
ATTACGCAGATCAAACGCTGGATGGTCCAATAGCCTCCGGACACACTCAA
CATTACCAGGGATGTCAGACATGGCTTGAAGAGCAAACCATTTATTCACA
ACCAAATAGTCATGCTGCCACTTGCCATAGAAATCATCCAACACCTCATC
TCGAATTTTACCAGGCTTCTGGACAATTGCTGCCAAAGCTGCAAATTGTT
CCGTCATATTTGTGGCAGTTTTATATTCCCGCAATGCAAGCTCCACAATA
TCAGCATCTTCAAGTGATGCAAGATAGGCAAGTGCAATATTCTTCAAAGC
ACGCCTGGNCATATTATGATGATTAAACACGTACTCTCCTGTGCTCCTAT
TATTTTCCACTGTGGTTAAAAACCCT
back to top