CK938402

Overview
NameCK938402
Unique NameCK938402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938402_ssr662 microsatellite CK938402_ssr662:662..673. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6287 contig Csv1_Contig6287:1114..1885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938402 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.042e-64
Identity = 114/177 (64.41%), Postives = 142/177 (80.23%), Query Frame = 3
Query:    6 DLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDS---AVCSACEMTVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 527
            DLL+S   P+K+C QI LC F+G   VS GI++VV++    + DS    +CS CEMTVVW+QNQL+Q QTKE++++YINELCD +P+PMG+S +DCG++ +MP VSFTIG KIF+L+PE+YILK GEG    CISGF AFD+PPPRGPLWILGDVFMG YHTVFD GKLR+G AEAA
Sbjct:  337 DLLLSEADPKKICSQINLCTFDGTRGVSMGIESVVDENAGKSSDSLHDGMCSVCEMTVVWMQNQLRQNQTKERIINYINELCDRMPSPMGQSAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKVGEGPVAQCISGFTAFDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGSAEAA 513          
BLAST of CK938402 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 3.604e-61
Identity = 110/180 (61.11%), Postives = 138/180 (76.67%), Query Frame = 3
Query:    6 DLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDS------AVCSACEMTVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 527
            DLL++   P K+C Q+GLC F+G   VS GIK+VV+ E   AG+S       +C+ACEM VVW+QNQL Q +T++ +L+YIN+LCD LP+PMGES +DCG + +MP +SFTIG K F L PE+YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD GK+R+GFA++A
Sbjct:  333 DLLLAETQPSKICSQVGLCTFDGKHGVSAGIKSVVDDE---AGESNGLQSGPMCNACEMAVVWMQNQLAQNKTQDLILNYINQLCDKLPSPMGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGAYHTVFDYGKMRVGFAKSA 509          
BLAST of CK938402 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 6.148e-61
Identity = 108/177 (61.02%), Postives = 136/177 (76.84%), Query Frame = 3
Query:    6 DLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGD---SAVCSACEMTVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 527
            DLL++   P+K+C Q+GLC F+G   VS GI++VV+ E V +       +CSACEM VVW+QNQL Q +T++ +L Y+N+LC+ LP+PMGES +DCG + +MP++ FTIG K F L PE+YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD GKLRIGFA+AA
Sbjct:  332 DLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 508          
BLAST of CK938402 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 6.797e-60
Identity = 106/174 (60.92%), Postives = 138/174 (79.31%), Query Frame = 3
Query:    6 DLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMTVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 527
            +LL++   P+KVC Q+GLC F+G   VS GI++VV+KEN+  G  A+CS CEM VVW++NQL++ +TKE +L+Y N+LC+ LP+P GES + C +I  MPN++FTI +K F L+PEQYI+K  +G   VCISGFMAFD+PPPRGPLWILGDVFMG YHTVFD GK RIGFA++A
Sbjct:  325 NLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIESVVDKENL--GSDAMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA 496          
BLAST of CK938402 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.041e-55
Identity = 97/175 (55.43%), Postives = 132/175 (75.43%), Query Frame = 3
Query:    6 DLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEK-ENVSAGDSAVCSACEMTVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 527
            ++L+S   PEK+C Q+ LC+F+G+   S  I++VV+K +  S+G    C  C   VVW+QNQ++Q +T+E +++Y+++LC+ LP+PMGES +DC  + +MPN++FT+G K FNLSPEQY+LK GEG    CISGF A D+ PP GPLWILGDVFMG YHTVFD G LR+GFAEAA
Sbjct:  299 EMLLSEEQPEKICSQMKLCSFDGSHDTSMIIESVVDKSKGKSSGLPMRCVPCARWVVWMQNQIRQNETEENIINYVDKLCERLPSPMGESAVDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKVGEGATAQCISGFTAMDVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGFAEAA 473          
BLAST of CK938402 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.100e-25
Identity = 47/93 (50.54%), Postives = 69/93 (74.19%), Query Frame = 3
Query:  246 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 524
            ++P   GE +IDC ++PT+P +SF +G K ++L+ EQY+LK  +G   +C+SG M  ++PPP GPLWILGDVF+G Y+TVFD    R+GFA++
Sbjct:  303 AIPLIQGEYMIDCKKVPTLPTISFNVGGKTYSLTGEQYVLKESQGGKTICLSGLMGLEIPPPAGPLWILGDVFIGQYYTVFDRESNRVGFAKS 395          
BLAST of CK938402 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 3
Query:  117 ENVSAGDSAVCS-ACEMTVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 524
            ++V  GD+  C+  CE  +      L      E  ++ IN+     P   GE ++DC  IP +P +SF +G K F+L    Y+L+  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+T FD G  R+GFA A
Sbjct:  253 DSVKVGDTEFCNNGCE-AIADTGTSLIAGPVSE--VTAINKAIGGTPIMNGEYMVDCSLIPKLPKISFVLGGKSFDLEGADYVLRVAQMGKTICLSGFMGIDIPPPNGPLWILGDVFIGKYYTEFDMGNDRVGFATA 386          
BLAST of CK938402 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.339e-23
Identity = 55/141 (39.01%), Postives = 87/141 (61.70%), Query Frame = 3
Query:  108 VEKENVSAGDS-AVCSA-CEMTVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 524
            +  ++++ GD  ++C+  CE  V    + +     + K L    +   + P   GE +++C  +P++P +SFT+G +++ L+ EQYILK  +    +C+SGFM  D+P P GPLWILGDVFMG Y+TVFD    R+GFA+A
Sbjct:  258 IRVDSMAVGDQLSLCTGGCEAIVDSGTSLITGPSVEVKALQ---KAIGAFPLIQGEYMVNCDTVPSLPVISFTVGGQVYTLTGEQYILKVTQAGKTMCLSGFMGLDIPAPAGPLWILGDVFMGQYYTVFDRDANRVGFAKA 395          
BLAST of CK938402 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  246 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 527
            ++P   GE +I C ++ T+P ++  +G K + LSPE Y LK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFAEAA
Sbjct:  317 AVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 410          
BLAST of CK938402 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  246 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 527
            ++P   GE +I C ++P++P+V+ T+G K + LS E Y LK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+G AEAA
Sbjct:  252 AVPLIQGEYMIPCEKVPSLPDVTVTLGGKKYKLSSENYTLKVSQAGQTICLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDLNRVGLAEAA 345          
The following BLAST results are available for this feature:
BLAST of CK938402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ASPR_CUCPE2.042e-6464.41Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR1_ORYSJ3.604e-6161.11Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
ASPR_HORVU6.148e-6161.02Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
ASPRX_ORYSJ6.797e-6060.92Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
CYPR1_CYNCA5.041e-5555.43Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
CATD_CLUHA7.100e-2550.54Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
ASPP_AEDAE1.025e-2340.88Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATD_CHIHA1.339e-2339.01Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
CATD_HUMAN5.088e-2351.06Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_PIG6.645e-2351.06Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_C07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938402 ID=CK938402; Name=CK938402; organism=Citrus sinensis; type=EST; length=772bp
GGGGGGATCTCTTAGTATCAGGGCTACTACCTGAGAAAGTATGTCAGCAG
ATTGGTTTATGTGCTTTCAATGGCGCTGAATATGTGAGTACTGGGATCAA
GACCGTGGTTGAGAAGGAAAACGTATCAGCCGGGGATAGTGCTGTGTGCA
GTGCTTGTGAAATGACCGTGGTTTGGGTCCAGAATCAGCTAAAACAAAAG
CAAACAAAGGAGAAAGTACTCAGTTATATAAATGAGCTCTGCGACAGCCT
GCCAAATCCGATGGGAGAATCAATTATTGACTGTGGTCGCATTCCAACCA
TGCCAAATGTTTCATTCACCATCGGAGACAAAATTTTCAACCTCTCTCCA
GAGCAGTATATTCTGAAAACCGGAGAGGGGATTGCAGAAGTCTGCATCAG
TGGCTTCATGGCTTTCGACCTGCCTCCTCCAAGGGGTCCTCTGTGGATTC
TGGGAGATGTATTCATGGGGGTTTATCACACTGTTTTCGACTCTGGTAAG
CTCCGGATCGGCTTTGCTGAGGCTGCGTAATGATCTACTTACTGTCAAGT
TTTTATGTAGTAGCAGCGATCATCACCTGCTCATATGAGGAGGAGGGTTG
TAGAATGTAGATTATGGTTTTCATGTACTGTAAAACGATCAGTATGCTTT
TATGCATAACTATCATCATCATCACCACAGATGATATGCTGATATATACT
TATGTAAAATCCTATCATCCTATGTTTAAAGTACTTCAATTTTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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