CK938401

Overview
NameCK938401
Unique NameCK938401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938401_ssr683 microsatellite CK938401_ssr683:683..694. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10401 contig Csv1_Contig10401:3..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938401 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTY (UPF0047 protein yjbQ OS=Salmonella typhimurium GN=yjbQ PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.799e-33
Identity = 72/139 (51.80%), Postives = 93/139 (66.91%), Query Frame = 2
Query:  191 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 607
            W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR D E    K VP+  +A ++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQGIWL EHR    PRK++ TL G
Sbjct:    2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVRADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIWLGEHRIHGGPRKIIATLQG 137          
BLAST of CK938401 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTI (UPF0047 protein yjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.799e-33
Identity = 72/139 (51.80%), Postives = 93/139 (66.91%), Query Frame = 2
Query:  191 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 607
            W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR D E    K VP+  +A ++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQGIWL EHR    PRK++ TL G
Sbjct:    2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVRADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIWLGEHRIHGGPRKIIATLQG 137          
BLAST of CK938401 vs. ExPASy Swiss-Prot
Match: YJBQ_ECOLI (UPF0047 protein yjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.055e-32
Identity = 69/139 (49.64%), Postives = 91/139 (65.47%), Query Frame = 2
Query:  191 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 607
            W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR D E F  + VP+  +  ++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQGIWL EHR     R+++ TL G
Sbjct:    2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVRHDMERFFLRTVPDNGN--YEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQG 137          
BLAST of CK938401 vs. ExPASy Swiss-Prot
Match: YJBQ_ECO57 (UPF0047 protein yjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.055e-32
Identity = 69/139 (49.64%), Postives = 91/139 (65.47%), Query Frame = 2
Query:  191 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 607
            W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR D E F  + VP+  +  ++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQGIWL EHR     R+++ TL G
Sbjct:    2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVRHDMERFFLRTVPDNGN--YEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQG 137          
BLAST of CK938401 vs. ExPASy Swiss-Prot
Match: YE72_SCHPO (UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe GN=SPAC4A8.02c PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.589e-31
Identity = 68/138 (49.28%), Postives = 96/138 (69.57%), Query Frame = 2
Query:  197 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 610
            Q+ +TL    +G ++IT  +VK++ + L  F  G  + F+ HTSA+LTINEN+D+D R D    L+KIVPE  SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ I L E R  P  R +V T+ G+
Sbjct:    5 QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRADMNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDIQLAEFRRQPHSRTIVCTIIGL 139          
BLAST of CK938401 vs. ExPASy Swiss-Prot
Match: Y1880_SYNY3 (UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803) GN=sll1880 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.354e-21
Identity = 58/141 (41.13%), Postives = 84/141 (59.57%), Query Frame = 2
Query:  188 RWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPE-GRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 607
            R  Q+ + +    +  H    KI   +    S  K GL  +F+ HTSASL I EN D DV  D   F  ++VPE GR   ++H+ EG DDMPAHI+S++   +  IPI +G+L +GTWQG++L EHR  P  R+V++ ++G
Sbjct:    9 RQHQEILVIATQGKSLHNFNSKIQAVVQH--SGVKTGLCTVFVRHTSASLIIQENADPDVLTDLAIFFAQLVPEDGRR--YRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLGTWQGVFLWEHRQRPHQREVIVHVSG 145          
BLAST of CK938401 vs. ExPASy Swiss-Prot
Match: Y1081_METJA (UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii GN=MJ1081 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  242 ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 607
            ITP I+  I++  S+ K G+A +++ HT+A +TINEN D  V+ D   FL+ ++P+     W  T LEG  D  AHIKSS+ GC+ TI I DG+  +GTWQGI+  E  D P  R+  + + G
Sbjct:   23 ITPYIISAISE--SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPKN----WNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQGIFFAEF-DGPRRREFYVKIIG 136          
BLAST of CK938401 vs. ExPASy Swiss-Prot
Match: YUGU_BACSU (UPF0047 protein yugU OS=Bacillus subtilis GN=yugU PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 43/122 (35.25%), Postives = 65/122 (53.28%), Query Frame = 2
Query:  254 IVKEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEG--PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 607
            I +E+   L E     G A ++  HT+A +TINEN D DV+ D     +++ P      W+H L+     +  AH+KSS  G +  + + +G+L +GTWQGI+ CE  D P  R   I + G
Sbjct:   18 ITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYP------WEHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEF-DGPRTRTCYIKMMG 132          
The following BLAST results are available for this feature:
BLAST of CK938401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YJBQ_SALTY7.799e-3351.80UPF0047 protein yjbQ OS=Salmonella typhimurium GN=... [more]
YJBQ_SALTI7.799e-3351.80UPF0047 protein yjbQ OS=Salmonella typhi GN=yjbQ P... [more]
YJBQ_ECOLI5.055e-3249.64UPF0047 protein yjbQ OS=Escherichia coli (strain K... [more]
YJBQ_ECO575.055e-3249.64UPF0047 protein yjbQ OS=Escherichia coli O157:H7 G... [more]
YE72_SCHPO5.589e-3149.28UPF0047 protein C4A8.02c OS=Schizosaccharomyces po... [more]
Y1880_SYNY32.354e-2141.13UPF0047 protein sll1880 OS=Synechocystis sp. (stra... [more]
Y1081_METJA4.593e-1743.09UPF0047 protein MJ1081 OS=Methanocaldococcus janna... [more]
YUGU_BACSU1.294e-1135.25UPF0047 protein yugU OS=Bacillus subtilis GN=yugU ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004443_C06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938401 ID=CK938401; Name=CK938401; organism=Citrus sinensis; type=EST; length=818bp
GGGGATGCAATTGCAANTGCGAAGCAGCTCCTCGGCCTCCGTTTTGTTTT
CAGCCGTACAGGTGAAGCCACCGTCATCGCCACCGGTTCGTGTAAAAGCC
CTGTTCACAAAAAATCCGGGCTCGGGCACCCTAAAAAATTCCAATTCCAA
TACCAATCCCAATCCCAATCCCATGGCTTCTAATCCTAGGTGGGCACAGA
AGACTGTAACTCTCCCTCCACTTCGCCGTGGCTGTCATCTCATTACCCCT
AAGATAGTGAAGGAAATCGCGCAAGACTTGTCAGAATTCAAGTGTGGCCT
TGCGCATCTCTTTTTGCTGCACACAAGTGCCTCTCTTACTATTAATGAGA
ATTATGACTCTGATGTTCGGGATGACACCGAGACTTTCCTCAACAAAATA
GTCCCAGAGGGGAGATCAGCTCCTTGGAAGCATACCCTCGAAGGCCCAGA
TGACATGCCAGCACATATTAAATCATCAATGTTTGGTTGCACACTCACGA
TTCCAATCACAGATGGGCAGCTAAACATGGGAACTTGGCAGGGAATATGG
CTGTGCGAGCATCGCGATGCACCCACTCCTCGCAAAGTCGTCATCACTCT
CAATGGAATATGATTCAAATAGGAGATGAGTGCTTTTGTTCTGTTACTTT
TCTCCTTTTGACTGAAATGGTTAATGGCGTGTAATGAATGAATGTAAACA
TAGCAAGAAAGAAGTGTCTATGTTGTTGTTGGGATGATGTATGCAGTGAG
GTACATAATTTCCTTAATGTATGTAATAAACCCAATCCACCCTTCTTGAT
ATGTATTGCCTTAAGGGG
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